From 3007ddc5fda58e9859d32d68be51a03c4d34e9f5 Mon Sep 17 00:00:00 2001
From: Mirco Nasuti <mirco.nasuti@chuv.ch>
Date: Tue, 30 Aug 2016 15:02:37 +0200
Subject: [PATCH] add second datasource
---
.gitignore | 1 +
docker/runner/config/application.tmpl | 5 +
.../eu/hbp/mip/controllers/GroupsApi.java | 23 +-
.../eu/hbp/mip/controllers/RequestsApi.java | 2 +-
.../java/eu/hbp/mip/controllers/StatsApi.java | 11 +-
.../eu/hbp/mip/controllers/VariablesApi.java | 35 +-
.../hbp/mip/repositories/GroupRepository.java | 11 -
.../mip/repositories/VariableRepository.java | 11 -
src/main/java/eu/hbp/mip/utils/CSVUtil.java | 217 --
src/main/resources/data/variables.json | 2107 +++++++++++++++++
10 files changed, 2161 insertions(+), 262 deletions(-)
delete mode 100644 src/main/java/eu/hbp/mip/repositories/GroupRepository.java
delete mode 100644 src/main/java/eu/hbp/mip/repositories/VariableRepository.java
delete mode 100644 src/main/java/eu/hbp/mip/utils/CSVUtil.java
create mode 100644 src/main/resources/data/variables.json
diff --git a/.gitignore b/.gitignore
index 533ab0d6d..7ab25eb2c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,3 +4,4 @@ target/
.DS_Store
.m2
*.jar
+src/main/resources/data/
diff --git a/docker/runner/config/application.tmpl b/docker/runner/config/application.tmpl
index f6e1647e4..a60439803 100644
--- a/docker/runner/config/application.tmpl
+++ b/docker/runner/config/application.tmpl
@@ -7,6 +7,11 @@ spring:
username: {{ default .Env.DB_USER "postgres" }}
password: {{ .Env.DB_PASSWORD }}
driver-class-name: org.postgresql.Driver
+ variablesDatasource:
+ url: {{ default .Env.VARIABLES_DB_URL "jdbc:postgresql://172.22.0.1:5433/postgres" }}
+ username: {{ default .Env.VARIABLES_DB_USER "postgres" }}
+ password: {{ .Env.VARIABLES_DB_PASSWORD }}
+ driver-class-name: org.postgresql.Driver
jpa:
hibernate:
dialect: org.hibernate.dialect.PostgreSQL9Dialect
diff --git a/src/main/java/eu/hbp/mip/controllers/GroupsApi.java b/src/main/java/eu/hbp/mip/controllers/GroupsApi.java
index dec89f6c3..571553bcb 100644
--- a/src/main/java/eu/hbp/mip/controllers/GroupsApi.java
+++ b/src/main/java/eu/hbp/mip/controllers/GroupsApi.java
@@ -4,19 +4,24 @@
package eu.hbp.mip.controllers;
+import com.google.gson.Gson;
+import com.google.gson.stream.JsonReader;
+import eu.hbp.mip.model.Variable;
import io.swagger.annotations.Api;
import io.swagger.annotations.ApiOperation;
import io.swagger.annotations.ApiResponse;
import io.swagger.annotations.ApiResponses;
import eu.hbp.mip.model.Group;
-import eu.hbp.mip.repositories.GroupRepository;
import org.apache.log4j.Logger;
-import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.RequestMapping;
import org.springframework.web.bind.annotation.RequestMethod;
import org.springframework.web.bind.annotation.RestController;
+import java.io.BufferedReader;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+
import static org.springframework.http.MediaType.APPLICATION_JSON_VALUE;
@RestController
@@ -26,18 +31,22 @@ public class GroupsApi {
private static final Logger LOGGER = Logger.getLogger(GroupsApi.class);
- private static final String ROOT_CODE = "root";
+ private static final String VARIABLES_FILE = "data/variables.json";
- @Autowired
- GroupRepository groupRepository;
@ApiOperation(value = "Get the root group (containing all subgroups)", response = Group.class)
@ApiResponses(value = { @ApiResponse(code = 200, message = "Success") })
@RequestMapping(method = RequestMethod.GET)
- public ResponseEntity<Group> getTheRootGroup() {
+ public ResponseEntity<Object> getTheRootGroup() {
LOGGER.info("Get root group and its whole sub-groups tree");
- return ResponseEntity.ok(groupRepository.findOne(ROOT_CODE));
+ InputStream is = Variable.class.getClassLoader().getResourceAsStream(VARIABLES_FILE);
+ InputStreamReader isr = new InputStreamReader(is);
+ BufferedReader br = new BufferedReader(isr);
+
+ Object hierarchy = new Gson().fromJson(new JsonReader(br), Object.class);
+
+ return ResponseEntity.ok(hierarchy);
}
diff --git a/src/main/java/eu/hbp/mip/controllers/RequestsApi.java b/src/main/java/eu/hbp/mip/controllers/RequestsApi.java
index 116a1ac96..2d55bc4f6 100644
--- a/src/main/java/eu/hbp/mip/controllers/RequestsApi.java
+++ b/src/main/java/eu/hbp/mip/controllers/RequestsApi.java
@@ -32,7 +32,7 @@ public class RequestsApi {
) {
LOGGER.info("Post a request");
- return ResponseEntity.ok(null);
+ return ResponseEntity.ok(null); // TODO: Get data from second datasource
}
}
diff --git a/src/main/java/eu/hbp/mip/controllers/StatsApi.java b/src/main/java/eu/hbp/mip/controllers/StatsApi.java
index 015929d11..315051856 100644
--- a/src/main/java/eu/hbp/mip/controllers/StatsApi.java
+++ b/src/main/java/eu/hbp/mip/controllers/StatsApi.java
@@ -4,14 +4,13 @@
package eu.hbp.mip.controllers;
-import eu.hbp.mip.repositories.VariableRepository;
+import eu.hbp.mip.model.GeneralStats;
+import eu.hbp.mip.repositories.ArticleRepository;
+import eu.hbp.mip.repositories.UserRepository;
import io.swagger.annotations.Api;
import io.swagger.annotations.ApiOperation;
import io.swagger.annotations.ApiResponse;
import io.swagger.annotations.ApiResponses;
-import eu.hbp.mip.model.GeneralStats;
-import eu.hbp.mip.repositories.ArticleRepository;
-import eu.hbp.mip.repositories.UserRepository;
import org.apache.log4j.Logger;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.ResponseEntity;
@@ -34,8 +33,6 @@ public class StatsApi {
@Autowired
ArticleRepository articleRepository;
- @Autowired
- VariableRepository variableRepository;
@ApiOperation(value = "Get general statistics", response = GeneralStats.class)
@ApiResponses(value = {@ApiResponse(code = 200, message = "Found"), @ApiResponse(code = 404, message = "Not found") })
@@ -47,7 +44,7 @@ public class StatsApi {
stats.setUsers(userRepository.count());
stats.setArticles(articleRepository.count());
- stats.setVariables(variableRepository.count());
+ stats.setVariables(0L); // TODO: compute from adni_merge DB
return ResponseEntity.ok(stats);
}
diff --git a/src/main/java/eu/hbp/mip/controllers/VariablesApi.java b/src/main/java/eu/hbp/mip/controllers/VariablesApi.java
index 505b90bdb..7849409a9 100644
--- a/src/main/java/eu/hbp/mip/controllers/VariablesApi.java
+++ b/src/main/java/eu/hbp/mip/controllers/VariablesApi.java
@@ -5,15 +5,18 @@
package eu.hbp.mip.controllers;
-import eu.hbp.mip.repositories.VariableRepository;
-import io.swagger.annotations.*;
+import com.google.gson.Gson;
+import com.google.gson.stream.JsonReader;
import eu.hbp.mip.model.Value;
import eu.hbp.mip.model.Variable;
+import io.swagger.annotations.*;
import org.apache.log4j.Logger;
-import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
+import java.io.BufferedReader;
+import java.io.InputStream;
+import java.io.InputStreamReader;
import java.util.List;
import static org.springframework.http.MediaType.APPLICATION_JSON_VALUE;
@@ -25,8 +28,8 @@ public class VariablesApi {
private static final Logger LOGGER = Logger.getLogger(VariablesApi.class);
- @Autowired
- VariableRepository variableRepository;
+ private static final String VARIABLES_FILE = "data/variables.json";
+
@ApiOperation(value = "Get variables", response = Variable.class, responseContainer = "List")
@ApiResponses(value = { @ApiResponse(code = 200, message = "Success") })
@@ -41,7 +44,7 @@ public class VariablesApi {
) {
LOGGER.info("Get variables");
- return ResponseEntity.ok(variableRepository.findAll());
+ return ResponseEntity.ok(null); // TODO : findall
}
@ApiOperation(value = "Get a variable", response = Variable.class)
@@ -52,7 +55,7 @@ public class VariablesApi {
) {
LOGGER.info("Get a variable");
- return ResponseEntity.ok(variableRepository.findOne(code));
+ return ResponseEntity.ok(null); // TODO findOne(code)
}
@@ -65,7 +68,23 @@ public class VariablesApi {
) {
LOGGER.info("Get values from a variable");
- return ResponseEntity.ok(variableRepository.findOne(code).getValues());
+ return ResponseEntity.ok(null); // TODO : findOne(code).getValues()
+ }
+
+ @ApiOperation(value = "Get groups and variables hierarchy", response = Variable.class)
+ @ApiResponses(value = { @ApiResponse(code = 200, message = "Found"), @ApiResponse(code = 404, message = "Not found") })
+ @RequestMapping(value = "/hierarchy", method = RequestMethod.GET)
+ public ResponseEntity<Object> getAVariable(
+ ) {
+ LOGGER.info("Get groups and variables hierarchy");
+
+ InputStream is = Variable.class.getClassLoader().getResourceAsStream(VARIABLES_FILE);
+ InputStreamReader isr = new InputStreamReader(is);
+ BufferedReader br = new BufferedReader(isr);
+
+ Object hierarchy = new Gson().fromJson(new JsonReader(br), Object.class);
+
+ return ResponseEntity.ok(hierarchy);
}
diff --git a/src/main/java/eu/hbp/mip/repositories/GroupRepository.java b/src/main/java/eu/hbp/mip/repositories/GroupRepository.java
deleted file mode 100644
index ab6839f71..000000000
--- a/src/main/java/eu/hbp/mip/repositories/GroupRepository.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package eu.hbp.mip.repositories;
-
-import eu.hbp.mip.model.Group;
-import org.springframework.data.repository.CrudRepository;
-
-/**
- * Created by mirco on 11.07.16.
- */
-
-public interface GroupRepository extends CrudRepository<Group, String> {
-}
diff --git a/src/main/java/eu/hbp/mip/repositories/VariableRepository.java b/src/main/java/eu/hbp/mip/repositories/VariableRepository.java
deleted file mode 100644
index 3a4e7e2f5..000000000
--- a/src/main/java/eu/hbp/mip/repositories/VariableRepository.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package eu.hbp.mip.repositories;
-
-import eu.hbp.mip.model.Variable;
-import org.springframework.data.repository.CrudRepository;
-
-/**
- * Created by mirco on 11.07.16.
- */
-
-public interface VariableRepository extends CrudRepository<Variable, String> {
-}
diff --git a/src/main/java/eu/hbp/mip/utils/CSVUtil.java b/src/main/java/eu/hbp/mip/utils/CSVUtil.java
deleted file mode 100644
index ce56b7935..000000000
--- a/src/main/java/eu/hbp/mip/utils/CSVUtil.java
+++ /dev/null
@@ -1,217 +0,0 @@
-package eu.hbp.mip.utils;
-
-import eu.hbp.mip.repositories.VariableRepository;
-import org.apache.log4j.Logger;
-import eu.hbp.mip.model.Dataset;
-import eu.hbp.mip.model.Query;
-import eu.hbp.mip.model.Variable;
-import org.springframework.beans.factory.annotation.Autowired;
-
-import java.io.BufferedReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.util.*;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
-import java.util.stream.Collectors;
-
-/**
- * Created by mirco on 29.01.16.
- */
-public class CSVUtil {
-
- private static final Logger LOGGER = Logger.getLogger(CSVUtil.class);
-
- private static final String SEPARATOR = ",";
-
- @Autowired
- VariableRepository variableRepository;
-
- public Dataset parseValues(String filename, Query query)
- {
- List<String[]> rows = getRows(filename);
-
- Dataset result = new Dataset();
- String code = generateDSCode(query);
- Date date = new Date();
- List<String> header = new LinkedList<>();
- List<String> grouping = new LinkedList<>();
- List<String> variable = new LinkedList<>();
- Map<String, LinkedList<Object>> data = new HashMap<>();
-
- List<Variable> covs = new LinkedList<>();
- List<Variable> grps = new LinkedList<>();
- List<Variable> vars = new LinkedList<>();
- List<Variable> all = new LinkedList<>();
- covs.addAll(query.getCovariables());
- grps.addAll(query.getGrouping());
- vars.addAll(query.getVariables());
- all.addAll(query.getCovariables());
- all.addAll(query.getGrouping());
- all.addAll(query.getVariables());
-
- header.addAll(covs.stream().map(Variable::getCode).collect(Collectors.toList()));
- grouping.addAll(grps.stream().map(Variable::getCode).collect(Collectors.toList()));
- variable.addAll(vars.stream().map(Variable::getCode).collect(Collectors.toList()));
-
- try {
- InputStream is = Dataset.class.getClassLoader().getResourceAsStream(filename);
- InputStreamReader isr = new InputStreamReader(is);
- BufferedReader br = new BufferedReader(isr);
- String[] firstRow = br.readLine().split(SEPARATOR, -1);
- br.close();
- isr.close();
- is.close();
-
- for (Variable v : all) {
- String type = getTypeFromDB(v);
- String c = v.getCode();
- int idx = find(c, firstRow);
- List<Object> l = new LinkedList<>();
- LinkedList<Object> ll = new LinkedList<>();
- for (String[] row : rows) {
- switch (type) {
- case "T": {
- String d = null;
- String r = row[idx];
- if (!r.isEmpty())
- d = r;
- l.add(d);
- break;
- }
- case "I": {
- Integer d;
- try {
- d = Integer.parseInt(row[idx]);
- } catch (NumberFormatException e) {
- try {
- d = (int) Double.parseDouble(row[idx]); // Age
- // for
- // example
- // has type
- // I but is
- // double
- } catch (NumberFormatException e2) {
- d = null; // No value found
- }
- }
- l.add(d);
- break;
- }
- case "N": {
- Double d = null;
- try {
- d = Double.parseDouble(row[idx]);
- } catch (NumberFormatException e) {
- // should only happen when no data available ->
- // we
- // could have check this with
- // !row[idx].isEmpty()
- }
- l.add(d);
- break;
- }
- case "D": {
- String d = null; // Formatted (ISO8601) String
-
- // instead
- // of Date
- String r = row[idx];
- if (!r.isEmpty())
- d = r;
- l.add(d);
- break;
- }
- case "B": {
- Boolean d;
- d = !row[idx].isEmpty();
- l.add(d);
- break;
- }
- default: {
- String d = null;
- String r = row[idx];
- if (!r.isEmpty())
- d = r;
- l.add(d);
- break;
- }
- }
- }
- // TODO : should we remove this limit ???
- if(l.size() > 100)
- {
- ll.addAll(l.subList(0,99));
- }
- data.put(c, ll);
- }
- } catch (IOException e) {
- LOGGER.trace(e);
- }
- result.setCode(code);
- result.setDate(date);
- result.setHeader(header);
- result.setGrouping(grouping);
- result.setVariable(variable);
- result.setData(data);
-
- return result;
- }
-
- private List<String[]> getRows(String filename) {
- List<String[]> rows = new LinkedList<>();
- try {
- InputStream is = CSVUtil.class.getClassLoader().getResourceAsStream(filename);
- InputStreamReader isr = new InputStreamReader(is);
- BufferedReader br = new BufferedReader(isr);
- String[] firstRow = br.readLine().split(SEPARATOR, -1); // 1st row -> headers
- for (String line = br.readLine(); line != null; line = br.readLine()) {
- String[] row = line.split(SEPARATOR, -1);
- rows.add(row);
- }
- br.close();
- isr.close();
- is.close();
- } catch (IOException e) {
- LOGGER.trace(e);
- LOGGER.warn("A problem occured while trying to read a CSV file !");
- }
-
- return rows;
- }
-
- private int find(String code, String[] firstRow) {
- for (int i = 0; i < firstRow.length; i++) {
- if (firstRow[i].equals(code))
- return i;
- }
- return -1;
- }
-
- private String generateDSCode(Query query) {
- String prefix = "DS";
- String queryStr = Integer.toString(query.hashCode());
- String memId;
- Pattern p = Pattern.compile("@(\\w+)");
- Matcher m = p.matcher(queryStr);
- if (m.find()) {
- memId = m.group(1);
- } else {
- memId = Long.toString(new Date().getTime()); // In case a the regex fails (should not
- // happen)
- }
- return prefix + memId;
- }
-
- private String getTypeFromDB(Variable v)
- {
- String type = variableRepository.findOne(v.getCode()).getType();
- if(type == null)
- {
- type = "unknown";
- }
- return type;
- }
-
-}
diff --git a/src/main/resources/data/variables.json b/src/main/resources/data/variables.json
new file mode 100644
index 000000000..a59785ddd
--- /dev/null
+++ b/src/main/resources/data/variables.json
@@ -0,0 +1,2107 @@
+{
+ "groups": [
+ {
+ "groups": [
+ {
+ "groups": [
+ {
+ "groups": [
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right Accumbens Area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Accumbens Area",
+ "code": "RightAccumbensArea",
+ "length": 20
+ },
+ {
+ "description": "Left Accumbens Area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Accumbens Area",
+ "code": "LeftAccumbensArea",
+ "length": 20
+ },
+ {
+ "description": "Right Caudate",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Caudate",
+ "code": "RightCaudate",
+ "length": 20
+ },
+ {
+ "description": "Left Caudate",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Caudate",
+ "code": "LeftCaudate",
+ "length": 20
+ },
+ {
+ "description": "Right Pallidum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Pallidum",
+ "code": "RightPallidum",
+ "length": 20
+ },
+ {
+ "description": "Left Pallidum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Pallidum",
+ "code": "LeftPallidum",
+ "length": 20
+ },
+ {
+ "description": "Right Putamen",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Putamen",
+ "code": "RightPutamen",
+ "length": 20
+ },
+ {
+ "description": "Left Putamen",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Putamen",
+ "code": "LeftPutamen",
+ "length": 20
+ }
+ ],
+ "label": "Basal Ganglia",
+ "code": "basal_ganglia"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right Amygdala",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Amygdala",
+ "code": "RightAmygdala",
+ "length": 20
+ },
+ {
+ "description": "Left Amygdala",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Amygdala",
+ "code": "LeftAmygdala",
+ "length": 20
+ }
+ ],
+ "label": "Amygdala",
+ "code": "amygdala"
+ }
+ ],
+ "label": "Cerebral nuclei",
+ "code": "cerebral_nuclei"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Entorhinal UCSF Entorhinal mm3",
+ "label": "Entorhinal",
+ "code": "Entorhinal",
+ "methodology": "adni-merge"
+ },
+ {
+ "description": "Right anterior cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right anterior cingulate gyrus",
+ "code": "RightACgGanteriorcingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Left anterior cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left anterior cingulate gyrus",
+ "code": "LeftACgGanteriorcingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Right entorhinal area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right entorhinal area",
+ "code": "RightEntentorhinalarea",
+ "length": 20
+ },
+ {
+ "description": "Left entorhinal area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left entorhinal area",
+ "code": "LeftEntentorhinalarea",
+ "length": 20
+ },
+ {
+ "description": "Right middle cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right middle cingulate gyrus",
+ "code": "RightMCgGmiddlecingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Left middle cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left middle cingulate gyrus",
+ "code": "LeftMCgGmiddlecingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Right posterior cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right posterior cingulate gyrus",
+ "code": "RightPCgGposteriorcingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Left posterior cingulate gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left posterior cingulate gyrus",
+ "code": "LeftPCgGposteriorcingulategyrus",
+ "length": 20
+ },
+ {
+ "description": "Right parahippocampal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right parahippocampal gyrus",
+ "code": "RightPHGparahippocampalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left parahippocampal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left parahippocampal gyrus",
+ "code": "LeftPHGparahippocampalgyrus",
+ "length": 20
+ }
+ ],
+ "label": "Limbic",
+ "code": "limbic"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right fusiform gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right fusiform gyrus",
+ "code": "RightFuGfusiformgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left fusiform gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left fusiform gyrus",
+ "code": "LeftFuGfusiformgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right inferior temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right inferior temporal gyrus",
+ "code": "RightITGinferiortemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left inferior temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left inferior temporal gyrus",
+ "code": "LeftITGinferiortemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right middle temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right middle temporal gyrus",
+ "code": "RightMTGmiddletemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left middle temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left middle temporal gyrus",
+ "code": "LeftMTGmiddletemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right planum polare",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right planum polare",
+ "code": "RightPPplanumpolare",
+ "length": 20
+ },
+ {
+ "description": "Left planum polare",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left planum polare",
+ "code": "LeftPPplanumpolare",
+ "length": 20
+ },
+ {
+ "description": "Right planum temporale",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right planum temporale",
+ "code": "RightPTplanumtemporale",
+ "length": 20
+ },
+ {
+ "description": "Left planum temporale",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left planum temporale",
+ "code": "LeftPTplanumtemporale",
+ "length": 20
+ },
+ {
+ "description": "Right superior temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right superior temporal gyrus",
+ "code": "RightSTGsuperiortemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left superior temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left superior temporal gyrus",
+ "code": "LeftSTGsuperiortemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right temporal pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right temporal pole",
+ "code": "RightTMPtemporalpole",
+ "length": 20
+ },
+ {
+ "description": "Left temporal pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left temporal pole",
+ "code": "LeftTMPtemporalpole",
+ "length": 20
+ },
+ {
+ "description": "Right transverse temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right transverse temporal gyrus",
+ "code": "RightTTGtransversetemporalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left transverse temporal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left transverse temporal gyrus",
+ "code": "LeftTTGtransversetemporalgyrus",
+ "length": 20
+ }
+ ],
+ "label": "Temporal",
+ "code": "temporal"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right calcarine cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right calcarine cortex",
+ "code": "RightCalccalcarinecortex",
+ "length": 20
+ },
+ {
+ "description": "Left calcarine cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left calcarine cortex",
+ "code": "LeftCalccalcarinecortex",
+ "length": 20
+ },
+ {
+ "description": "Right cuneus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right cuneus",
+ "code": "RightCuncuneus",
+ "length": 20
+ },
+ {
+ "description": "Left cuneus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left cuneus",
+ "code": "LeftCuncuneus",
+ "length": 20
+ },
+ {
+ "description": "Right inferior occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right inferior occipital gyrus",
+ "code": "RightIOGinferioroccipitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left inferior occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left inferior occipital gyrus",
+ "code": "LeftIOGinferioroccipitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right lingual gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right lingual gyrus",
+ "code": "RightLiGlingualgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left lingual gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left lingual gyrus",
+ "code": "LeftLiGlingualgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right middle occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right middle occipital gyrus",
+ "code": "RightMOGmiddleoccipitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left middle occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left middle occipital gyrus",
+ "code": "LeftMOGmiddleoccipitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right occipital pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right occipital pole",
+ "code": "RightOCPoccipitalpole",
+ "length": 20
+ },
+ {
+ "description": "Left occipital pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left occipital pole",
+ "code": "LeftOCPoccipitalpole",
+ "length": 20
+ },
+ {
+ "description": "Right occipital fusiform gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right occipital fusiform gyrus",
+ "code": "RightOFuGoccipitalfusiformgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left occipital fusiform gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left occipital fusiform gyrus",
+ "code": "LeftOFuGoccipitalfusiformgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right superior occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right superior occipital gyrus",
+ "code": "RightSOGsuperioroccipitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left superior occipital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left superior occipital gyrus",
+ "code": "LeftSOGsuperioroccipitalgyrus",
+ "length": 20
+ }
+ ],
+ "label": "Occipital",
+ "code": "occipital"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right angular gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right angular gyrus",
+ "code": "RightAnGangulargyrus",
+ "length": 20
+ },
+ {
+ "description": "Left angular gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left angular gyrus",
+ "code": "LeftAnGangulargyrus",
+ "length": 20
+ },
+ {
+ "description": "Right postcentral gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right postcentral gyrus medial segment",
+ "code": "RightMPoGpostcentralgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Left postcentral gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left postcentral gyrus medial segment",
+ "code": "LeftMPoGpostcentralgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Right precuneus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right precuneus",
+ "code": "RightPCuprecuneus",
+ "length": 20
+ },
+ {
+ "description": "Left precuneus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left precuneus",
+ "code": "LeftPCuprecuneus",
+ "length": 20
+ },
+ {
+ "description": "Right postcentral gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right postcentral gyrus",
+ "code": "RightPoGpostcentralgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left postcentral gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left postcentral gyrus",
+ "code": "LeftPoGpostcentralgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right supramarginal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right supramarginal gyrus",
+ "code": "RightSMGsupramarginalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left supramarginal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left supramarginal gyrus",
+ "code": "LeftSMGsupramarginalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right superior parietal lobule",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right superior parietal lobule",
+ "code": "RightSPLsuperiorparietallobule",
+ "length": 20
+ },
+ {
+ "description": "Left superior parietal lobule",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left superior parietal lobule",
+ "code": "LeftSPLsuperiorparietallobule",
+ "length": 20
+ }
+ ],
+ "label": "Parietal",
+ "code": "parietal"
+ },
+ {
+ "groups": [
+ ],
+ "variables": [
+ {
+ "description": "Right anterior orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right anterior orbital gyrus",
+ "code": "RightAOrGanteriororbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left anterior orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left anterior orbital gyrus",
+ "code": "LeftAOrGanteriororbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right central operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right central operculum",
+ "code": "RightCOcentraloperculum",
+ "length": 20
+ },
+ {
+ "description": "Left central operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left central operculum",
+ "code": "LeftCOcentraloperculum",
+ "length": 20
+ },
+ {
+ "description": "Right frontal operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right frontal operculum",
+ "code": "RightFOfrontaloperculum",
+ "length": 20
+ },
+ {
+ "description": "Left frontal operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left frontal operculum",
+ "code": "LeftFOfrontaloperculum",
+ "length": 20
+ },
+ {
+ "description": "Right frontal pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right frontal pole",
+ "code": "RightFRPfrontalpole",
+ "length": 20
+ },
+ {
+ "description": "Left frontal pole",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left frontal pole",
+ "code": "LeftFRPfrontalpole",
+ "length": 20
+ },
+ {
+ "description": "Right gyrus rectus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right gyrus rectus",
+ "code": "RightGRegyrusrectus",
+ "length": 20
+ },
+ {
+ "description": "Left gyrus rectus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left gyrus rectus",
+ "code": "LeftGRegyrusrectus",
+ "length": 20
+ },
+ {
+ "description": "Right lateral orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right lateral orbital gyrus",
+ "code": "RightLOrGlateralorbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left lateral orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left lateral orbital gyrus",
+ "code": "LeftLOrGlateralorbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right medial frontal cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right medial frontal cortex",
+ "code": "RightMFCmedialfrontalcortex",
+ "length": 20
+ },
+ {
+ "description": "Left medial frontal cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left medial frontal cortex",
+ "code": "LeftMFCmedialfrontalcortex",
+ "length": 20
+ },
+ {
+ "description": "Right middle frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right middle frontal gyrus",
+ "code": "RightMFGmiddlefrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left middle frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left middle frontal gyrus",
+ "code": "LeftMFGmiddlefrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right medial orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right medial orbital gyrus",
+ "code": "RightMOrGmedialorbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left medial orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left medial orbital gyrus",
+ "code": "LeftMOrGmedialorbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right precentral gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right precentral gyrus medial segment",
+ "code": "RightMPrGprecentralgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Left precentral gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left precentral gyrus medial segment",
+ "code": "LeftMPrGprecentralgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Right superior frontal gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right superior frontal gyrus medial segment",
+ "code": "RightMSFGsuperiorfrontalgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Left superior frontal gyrus medial segment",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left superior frontal gyrus medial segment",
+ "code": "LeftMSFGsuperiorfrontalgyrusmedialsegment",
+ "length": 20
+ },
+ {
+ "description": "Right opercular part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right opercular part of the inferior frontal gyrus",
+ "code": "RightOpIFGopercularpartoftheinferiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left opercular part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left opercular part of the inferior frontal gyrus",
+ "code": "LeftOpIFGopercularpartoftheinferiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right orbital part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right orbital part of the inferior frontal gyrus",
+ "code": "RightOrIFGorbitalpartoftheinferiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left orbital part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left orbital part of the inferior frontal gyrus",
+ "code": "LeftOrIFGorbitalpartoftheinferiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right parietal operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right parietal operculum",
+ "code": "RightPOparietaloperculum",
+ "length": 20
+ },
+ {
+ "description": "Left parietal operculum",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left parietal operculum",
+ "code": "LeftPOparietaloperculum",
+ "length": 20
+ },
+ {
+ "description": "Right posterior orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right posterior orbital gyrus",
+ "code": "RightPOrGposteriororbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left posterior orbital gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left posterior orbital gyrus",
+ "code": "LeftPOrGposteriororbitalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right precentral gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right precentral gyrus",
+ "code": "RightPrGprecentralgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left precentral gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left precentral gyrus",
+ "code": "LeftPrGprecentralgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right subcallosal area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right subcallosal area",
+ "code": "RightSCAsubcallosalarea",
+ "length": 20
+ },
+ {
+ "description": "Left subcallosal area",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left subcallosal area",
+ "code": "LeftSCAsubcallosalarea",
+ "length": 20
+ },
+ {
+ "description": "Right superior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right superior frontal gyrus",
+ "code": "RightSFGsuperiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left superior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left superior frontal gyrus",
+ "code": "LeftSFGsuperiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Right supplementary motor cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right supplementary motor cortex",
+ "code": "RightSMCsupplementarymotorcortex",
+ "length": 20
+ },
+ {
+ "description": "Left supplementary motor cortex",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left supplementary motor cortex",
+ "code": "LeftSMCsupplementarymotorcortex",
+ "length": 20
+ },
+ {
+ "description": "Right triangular part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right triangular part of the inferior frontal gyrus",
+ "code": "RightTrIFGtriangularpartoftheinferiorfrontalgyrus",
+ "length": 20
+ },
+ {
+ "description": "Left triangular part of the inferior frontal gyrus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left triangular part of the inferior frontal gyrus",
+ "code": "LeftTrIFGtriangularpartoftheinferiorfrontalgyrus",
+ "length": 20
+ }
+ ],
+ "label": "Frontal",
+ "code": "frontal"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right anterior insula",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right anterior insula",
+ "code": "RightAInsanteriorinsula",
+ "length": 20
+ },
+ {
+ "description": "Left anterior insula",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left anterior insula",
+ "code": "LeftAInsanteriorinsula",
+ "length": 20
+ },
+ {
+ "description": "Right posterior insula",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right posterior insula",
+ "code": "RightPInsposteriorinsula",
+ "length": 20
+ },
+ {
+ "description": "Left posterior insula",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left posterior insula",
+ "code": "LeftPInsposteriorinsula",
+ "length": 20
+ }
+ ],
+ "label": "Insula",
+ "code": "insula"
+ }
+ ],
+ "label": "Grey matter volume",
+ "code": "grey_matter_volume"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Ventricles UCSF Ventricles mm3. ",
+ "label": "Ventricles",
+ "code": "Ventricles",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "Ventricule",
+ "code": "ventricule"
+ }
+ ],
+ "label": "CSF",
+ "code": "csf"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Right Ventral DC",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Ventral DC",
+ "code": "RightVentralDC",
+ "length": 20
+ },
+ {
+ "description": "Left Ventral DC",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Ventral DC",
+ "code": "LeftVentralDC",
+ "length": 20
+ }
+ ],
+ "label": "Diencephalon",
+ "code": "diencephalon"
+ }
+ ],
+ "label": "White matter volume",
+ "code": "white_matter_volume"
+ }
+ ],
+ "label": "Brain anatomy",
+ "code": "brain_anatomy"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Hippocampus UCSF Hippocampus mm3",
+ "label": "Hippocampus",
+ "code": "Hippocampus",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "WholeBrain UCSF WholeBrain mm3",
+ "label": "Whole Brain",
+ "code": "WholeBrain",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Fusiform UCSF Fusiform mm3",
+ "label": "Fusiform",
+ "code": "Fusiform",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "MidTemp UCSF Med Temp mm3",
+ "label": "MidTemp",
+ "code": "MidTemp",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "ICV UCSF ICV mm3",
+ "label": "ICV",
+ "code": "ICV",
+ "methodology": "adni-merge"
+ },
+ {
+ "description": "Right Hippocampus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Hippocampus",
+ "code": "RightHippocampus",
+ "length": 20
+ },
+ {
+ "description": "Left Hippocampus",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Hippocampus",
+ "code": "LeftHippocampus",
+ "length": 20
+ },
+ {
+ "description": "Right Thalamus Proper",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Right Thalamus Proper",
+ "code": "RightThalamusProper",
+ "length": 20
+ },
+ {
+ "description": "Left Thalamus Proper",
+ "units": "cm3",
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Left Thalamus Proper",
+ "code": "LeftThalamusProper",
+ "length": 20
+ }
+ ],
+ "label": "Grey matter surface",
+ "code": "grey_matter_surface"
+ }
+ ],
+ "label": "Brain",
+ "code": "brain"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "integer",
+ "description": "Visit Number from the baseline",
+ "label": "Visit Number",
+ "code": "VisitNumber",
+ "methodology": "lren-nmm-volumes"
+ },
+ {
+ "type": "integer",
+ "description": "Total Number of Visits since the baseline",
+ "label": "Total Number of Visits",
+ "code": "TotalVisits",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "number",
+ "code": "number"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Period Time between the EXAMDATE (clinical evaluation) and the scan examdate ",
+ "label": "Period Time",
+ "code": "PeriodTime",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "period",
+ "code": "period"
+ }
+ ],
+ "label": "visit",
+ "code": "visit"
+ },
+ {
+ "groups": [
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Apolipoprotein E (APOE) e4 allele: is the strongest risk factor for Late Onset Alzheimer Disease (LOAD). At least one copy of APOE-e4 ",
+ "methodology": "adni-merge",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "APOE4",
+ "code": "APOE4"
+ },
+ {
+ "description": "APOE",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "APOE",
+ "code": "APOE"
+ },
+ {
+ "description": "rs3818361_T",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs3818361_T",
+ "code": "rs3818361_T"
+ },
+ {
+ "description": "rs744373_C",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs744373_C",
+ "code": "rs744373_C"
+ },
+ {
+ "description": "rs190982_G",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs190982_G",
+ "code": "rs190982_G"
+ },
+ {
+ "description": "rs1476679_C",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs1476679_C",
+ "code": "rs1476679_C"
+ },
+ {
+ "description": "rs11767557_C",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs11767557_C",
+ "code": "rs11767557_C"
+ },
+ {
+ "description": "rs11136000_T",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs11136000_T",
+ "code": "rs11136000_T"
+ },
+ {
+ "description": "rs610932_A",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs610932_A",
+ "code": "rs610932_A"
+ },
+ {
+ "description": "rs3851179_A",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs3851179_A",
+ "code": "rs3851179_A"
+ },
+ {
+ "description": "rs17125944_C",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs17125944_C",
+ "code": "rs17125944_C"
+ },
+ {
+ "description": "rs10498633_T",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs10498633_T",
+ "code": "rs10498633_T"
+ },
+ {
+ "description": "rs3764650_G",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs3764650_G",
+ "code": "rs3764650_G"
+ },
+ {
+ "description": "rs3865444_T",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs3865444_T",
+ "code": "rs3865444_T"
+ },
+ {
+ "description": "rs2718058_G",
+ "methodology": "lren-nmm-volumes",
+ "type": "polynominal",
+ "enumerations": [
+ { "code": 0, "value": 0 },
+ { "code": 1, "value": 1 },
+ { "code": 2, "value": 2 }
+ ],
+ "label": "rs2718058_G",
+ "code": "rs2718058_G"
+ }
+ ],
+ "label": "APOE",
+ "code": "APOE"
+ }
+ ],
+ "label": "polymorphism",
+ "code": "polymorphism"
+ }
+ ],
+ "label": "Genetic",
+ "code": "genetic"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "Married", "value": "Married" },
+ { "code": "Widowed", "value": "Widowed" },
+ { "code": "Divorced", "value": "Divorced" },
+ { "code": "Never married", "value": "Never married" },
+ { "code": "Unknown", "value": "Unknown" }
+ ],
+ "description": " Participant Marital Status. 1=Married; 2=Widowed; 3=Divorced; 4=Never married; 5=Unknown",
+ "label": "Participant Marital Status",
+ "code": "PTMARRY",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "marital",
+ "code": "marital"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "Am Indian/Alaskan", "value": "American Indian or Alaskan Native" },
+ { "code": "Asian", "value": "Asian" },
+ { "code": "Hawaiian/Other PI", "value": "Native Hawaiian or Other Pacific Islander" },
+ { "code": "Black/African American", "value": "Black or African American" },
+ { "code": "More than one race", "value": "More than one race" },
+ { "code": "White", "value": "White" },
+ { "code": "Unknown", "value": "Unknown" }
+ ],
+ "description": "Race. 1=American Indian or Alaskan Native; 2=Asian; 3=Native Hawaiian or Other Pacific Islander; 4=Black or African American; 5=White; 6=More than one race; 7=Unknown",
+ "label": "Participant Racial Category",
+ "code": "PTRACCAT",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "country",
+ "code": "country"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "Hisp/Latino", "value": "Hispanic or Latino" },
+ { "code": "Not Hisp/Latino", "value": "Not Hispanic or Latino" },
+ { "code": "Unknown", "value": "Unknown" }
+ ],
+ "description": "Ethnicity. 1=Hispanic or Latino; 2=Not Hispanic or Latino; 3=Unknown",
+ "label": "Participant Ethnicity",
+ "code": "PTETHCAT",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "ethny",
+ "code": "ethny"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Participant Education.Education expressed in years",
+ "length": 2,
+ "maxValue": 20.0,
+ "methodology": "adni-merge",
+ "type": "integer",
+ "label": "Participant Education",
+ "minValue": 0.0,
+ "code": "PTEDUCAT"
+ }
+ ],
+ "label": "education",
+ "code": "education"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Participant Gender. Gender: refers to the socially constructed characteristics of women and men.",
+ "length": 1,
+ "methodology": "adni-merge",
+ "type": "binominal",
+ "enumerations": [
+ { "code": "Male", "value": "Male" },
+ { "code": "Female", "value": "Female" }
+ ],
+ "label": "Participant Gender",
+ "code": "PTGENDER"
+ }
+ ],
+ "label": "genre",
+ "code": "genre"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "description": "Participant Date of Birth. Age (Chronological age): refers to the calendar age. It is the number of years that have elapsed from birth to the exam date.",
+ "length": 3,
+ "maxValue": 130.0,
+ "methodology": "adni-merge",
+ "type": "real",
+ "label": "Age Baseline",
+ "minValue": 0.0,
+ "code": "AGE"
+ },
+ {
+ "description": "Participant Date of Birth. Age (Chronological age): refers to the calendar age. It is the number of years that have elapsed from birth to the exam date.",
+ "length": 3,
+ "maxValue": 130.0,
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Age",
+ "minValue": 0.0,
+ "code": "Exam-Age"
+ },
+ {
+ "description": "Participant Date of Birth. Age (Chronological age): refers to the calendar age. It is the number of years that have elapsed from birth to the exam date.",
+ "length": 3,
+ "maxValue": 130.0,
+ "methodology": "lren-nmm-volumes",
+ "type": "real",
+ "label": "Age",
+ "minValue": 0.0,
+ "code": "MRI-Age"
+ },
+ {
+ "description": "PTDOBYY",
+ "length": 4,
+ "methodology": "lren-nmm-volumes",
+ "type": "integer",
+ "label": "PTDOBYY",
+ "minValue": 0.0,
+ "code": "PTDOBYY"
+ },
+ {
+ "description": "PTDOBMM",
+ "maxValue": 12.0,
+ "methodology": "lren-nmm-volumes",
+ "type": "integer",
+ "label": "PTDOBMM",
+ "minValue": 0.0,
+ "code": "PTDOBMM"
+ }
+ ],
+ "label": "age",
+ "code": "age"
+ }
+ ],
+ "label": "demographic",
+ "code": "demographic"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "NL", "value": "NL" },
+ { "code": "LMCI", "value": "LMCI" },
+ { "code": "EMCI", "value": "EMCI" },
+ { "code": "AD", "value": "AD" },
+ { "code": "SMC", "value": "SMC" }
+ ],
+ "label": "Diagnostic Status Baseline",
+ "description": "Diagnostic status based in clinical/cognitive evaluation (AD, MCI, NC). ADNI1 baseline diagnosis at VISCODE==\"bl,\" 1=NL;2=MCI;3=AD",
+ "code": "DX",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "NL", "value": "NL" },
+ { "code": "LMCI", "value": "LMCI" },
+ { "code": "EMCI", "value": "EMCI" },
+ { "code": "AD", "value": "AD" }
+ ],
+ "label": "GroupBL",
+ "description": "GroupBL",
+ "code": "GroupBL",
+ "methodology": "lren-nmm-volumes"
+ },
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "NL", "value": "NL" },
+ { "code": "MCI", "value": "MCI" },
+ { "code": "Dementia", "value": "Dementia" },
+ { "code": "NL to MCI", "value": "NL to MCI" },
+ { "code": "MCI to Dementia", "value": "MCI to Dementia" },
+ { "code": "NL to Dementia", "value": "NL to Dementia" },
+ { "code": "MCI to NL", "value": "MCI to NL" },
+ { "code": "Dementia to MCI", "value": "Dementia to MCI" },
+ { "code": "Dementia to NL", "value": "Dementia to NL" }
+ ],
+ "label": "Conversion",
+ "description": "Conversion",
+ "code": "Conversion",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "diagnostic",
+ "code": "diagnostic"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "label": "CDRSB",
+ "description": "Clinical Dementia Rating. CDR is derived from the scores in each of the six categories (“box scores\"): 1. Memory\n2. Orientation 3. Judgment and Problem Solving 4. Community Affairs 5. Home and Hobbies 6. Personal Care (0, 0.5…5)",
+ "code": "CDRSB",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "CDRSB",
+ "code": "cdrsb"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "integer",
+ "maxValue": 30,
+ "minValue": 0,
+ "label": "FAQ",
+ "description": "FAQ Total Score (0-30). The FAQ measures activities of daily living. Sum of 10 subscores (0=Normal (0);1=Never did, but could do now (0);2=Never did, would have difficulty now (1);3=Has difficulty, but does by self (1);4=Requires assistance (2);5=Dependent (3)",
+ "code": "FAQ",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "FAQ",
+ "code": "faq"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "integer",
+ "maxValue": 30,
+ "minValue": 0,
+ "label": "MoCA",
+ "description": "Montreal Cognitive Assessment (MoCA). was designed as a rapid screening instrument for mild cognitive dysfunction. It assesses different cognitive domains: a ttention and concentration, executive functions, memory, language, visuoconstructional skills, conceptual thinking, calculations, and orientation. Time to administer the MoCA is approximately 10 minutes. The total possible score is 30 points; a score of 26 or above is considered normal. This test was not applied in ADNI-I.",
+ "code": "MOCA",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "MOCA",
+ "code": "moca"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "RAVLT (forgetting). Test of episodic memory. Recall and recognize 15 words after a 30-minute delay interval.",
+ "label": "RAVLT forgetting",
+ "code": "RAVLT_forgetting",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "RAVLT (learning). Test of episodic memory. Recall and recognize 15 words after a 30-minute delay interval.",
+ "label": "RAVLT learning",
+ "code": "RAVLT_learning",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "maxValue": 100.0,
+ "minValue": 2.0,
+ "description": "RAVLT (percent forgetting). Test of episodic memory. Recall and recognize 15 words after a 30-minute delay interval.",
+ "label": "RAVLT percent forgetting",
+ "code": "RAVLT_perc_forgetting",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "RAVLT (immediate). Test of episodic memory. Recall 15 words immediately after an intervening interference list",
+ "label": "RAVLT immediate",
+ "code": "RAVLT_immediate",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "RAVLT",
+ "code": "ravlt"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "integer",
+ "maxValue": 30,
+ "minValue": 0,
+ "label": "MMSE",
+ "description": "MMSE Total score. Mini-Mental State Examination (MMSE): is a global assessment of cognitive status (Folstein et al., 1975).The MMSE is a fully structured scale that consists of 30 points grouped into seven categories. A perfect score is 30 points; a score of 24 is the recommended, and most frequently used, cutpoint for dementia; a score of 23 or lower indicates dementia. ",
+ "code": "MMSE",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "MMSE",
+ "code": "mmse"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "label": "ADAS11",
+ "description": "ADAS Total score-11 items. Classic 70 point total. Excludes Q4 (Delayed Word Recall) and Q14 (Number Cancellation).",
+ "code": "ADAS11",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "label": "ADAS13",
+ "description": "ADAS Total score-13 items. 85 point total including Q4 (Delayed Word Recall) and Q14 (Number Cancellation). The ADAS is a brief cognitive test battery that assesses learning and memory, language production, language comprehension, constructional praxis, ideational praxis, and orientation.",
+ "code": "ADAS13",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "ADAS",
+ "code": "adas"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Participant ECog - Mem. memory 8 items (memory1-memory8). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2).",
+ "label": "EcogPtMem",
+ "code": "EcogPtMem",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Lang. language 9 items (lang1-lang9). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtLang",
+ "code": "EcogPtLang",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Vis/Spat. visuo-spatial 7 items (visspat1-visspat4, visspat6-visspat8 :visspat5 is a duplicated field (see DATADIC.csv)).Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtVisspat",
+ "code": "EcogPtVisspat",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Plan. planning 5 items (plan1-plan5). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtPlan",
+ "code": "EcogPtPlan",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Organ. organization 6 items (organ1-organ6). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtOrgan",
+ "code": "EcogPtOrgan",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Div atten. divided attention 4 items (divatt1-divatt4).Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtDivatt",
+ "code": "EcogPtDivatt",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Participant ECog - Total. total score 39 items. Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogPtTotal",
+ "code": "EcogPtTotal",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Mem at baseline. memory 8 items (memory1-memory8). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2).",
+ "label": "EcogSPMem",
+ "code": "EcogSPMem",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Lang. language 9 items (lang1-lang9). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPLang",
+ "code": "EcogSPLang",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Vis/Spat. visuo-spatial 7 items (visspat1-visspat4, visspat6-visspat8 :visspat5 is a duplicated field (see DATADIC.csv)).Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPVisspat",
+ "code": "EcogSPVisspat",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Plan. planning 5 items (plan1-plan5). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPPlan",
+ "code": "EcogSPPlan",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Organ. organization 6 items (organ1-organ6). Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPOrgan",
+ "code": "EcogSPOrgan",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Div atten. divided attention 4 items (divatt1-divatt4).Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPDivatt",
+ "code": "EcogSPDivatt",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Study Partner ECog - Total. total score 39 items. Everyday Cognition-Participant Self Report (Only applied in ADNIGO, 2). ",
+ "label": "EcogSPTotal",
+ "code": "EcogSPTotal",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "ECoG",
+ "code": "ecog"
+ }
+ ],
+ "label": "cognition",
+ "code": "cognition"
+ }
+ ],
+ "label": "clinical",
+ "code": "clinical"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "MRI Scanner field strength (1.5; 3..)",
+ "label": "",
+ "code": "MRIScanner",
+ "methodology": "lren-nmm-volumes"
+ },
+ {
+ "type": "real",
+ "description": "FLDSTRENG",
+ "label": "FLDSTRENG",
+ "code": "FLDSTRENG",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "text",
+ "description": "MRI-Code",
+ "label": "MRI-Code",
+ "code": "MRI-Code",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "machine",
+ "code": "machine"
+ }
+ ],
+ "label": "brain_scan",
+ "code": "brain_scan"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Average FDG-PET of angular, temporal, and posterior cingulate. Most important hypometabolic regions that are indicative of pathological metabolic change in MCI and AD.",
+ "label": "FDG",
+ "code": "FDG",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Average PIB SUVR of frontal cortex, anterior cingulate, precuneus cortex, and parietal cortex. ",
+ "label": "PIB",
+ "code": "PIB",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "AV45 Average AV45 SUVR of frontal, anterior cingulate, precuneus, and parietal cortex\nrelative to the cerebellum",
+ "label": "AV45",
+ "code": "AV45",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "PET",
+ "code": "PET"
+ }
+ ],
+ "variables": [
+ {
+ "type": "real",
+ "description": "AV45 Average AV45 SUVR of frontal, anterior cingulate, precuneus, and parietal cortex\nrelative to the cerebellum",
+ "label": "AV45",
+ "code": "AV45",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "brain_metabolism",
+ "code": "brain_metabolism"
+ },
+ {
+ "groups": [
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "integer",
+ "description": "ADNI Site ID (see https://www.google.com/maps/d/u/0/viewer?mid=1iju64ttr8yCx7ZFTOAz0r3haNbg)",
+ "label": "Site ID",
+ "code": "SITE",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "source",
+ "code": "source"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "ADNI1", "value": "ADNI" },
+ { "code": "ADNIGO", "value": "GO" },
+ { "code": "ADNI2", "value": "2" }
+ ],
+ "description": "Protocol under which data was collected (ADNI1, GO or 2)",
+ "label": "Collection Protocol",
+ "code": "COLPROT",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "polynominal",
+ "enumerations": [
+ { "code": "ADNI1", "value": "ADNI" },
+ { "code": "ADNIGO", "value": "GO" },
+ { "code": "ADNI2", "value": "2" }
+ ],
+ "description": "Protocol from which subject methodologyated",
+ "label": "methodology Protocol",
+ "code": "ORIGPROT",
+ "methodology": "adni-merge"
+ }
+ ],
+ "label": "protocol",
+ "code": "protocol"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "date",
+ "description": "Date of the exam (EXAMDATE). You can extract EXAMDATE from the registry table (REGISTRY.csv) using RID, Phase, and VISCODE.",
+ "label": "Exam Date",
+ "code": "EXAMDATE",
+ "methodology": "adni-merge",
+ "length": 10
+ },
+ {
+ "type": "date",
+ "description": "Scan Exam Date",
+ "label": "Scan Date",
+ "code": "ScanDate",
+ "methodology": "lren-nmm-volumes",
+ "length": 10
+ },
+ {
+ "type": "text",
+ "description": "Visit code ( sc, scmri, bl, m03, m06, m12, m18, m24, etc) sc:screening visit, bl: baseline, m: month. See ADNI2 VISCODE2 Assignment.pdf in ADNI website",
+ "label": "Visit Code",
+ "code": "VISCODE",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "date",
+ "code": "date"
+ }
+ ],
+ "label": "provenance",
+ "code": "provenance"
+ },
+ {
+ "groups": [],
+ "variables": [
+ {
+ "type": "real",
+ "description": "Roster ID (RID) which you see in every ADNI CSV file. ",
+ "label": "Roster ID",
+ "code": "RID",
+ "methodology": "adni-merge",
+ "length": 38
+ },
+ {
+ "type": "text",
+ "description": "ADNI subject IDs of the form 123_S_5678 ( the last 4 digits correspond to the roster ID (RID) which you see in every CSV file)",
+ "label": "Subject ID (PTID)",
+ "code": "PTID",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "text",
+ "description": "Visit code ( sc, scmri, bl, m03, m06, m12, m18, m24, etc) sc:screening visit, bl: baseline, m: month. See ADNI2 VISCODE2 Assignment.pdf in ADNI website",
+ "label": "Visit Code",
+ "code": "VISCODE",
+ "methodology": "adni-merge",
+ "length": 20
+ },
+ {
+ "type": "integer",
+ "description": "Months from baseline (to nearest 6 months, as continuous, based on VISCODE)",
+ "label": "Months from baseline (based on VISCODE)",
+ "code": "M",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "Months from baseline (to nearest 6 months, based on EXAMDATEs)",
+ "label": "Months from baseline (based on EXAMDATE)",
+ "code": "Month",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "text",
+ "description": "FSVERSION",
+ "label": "FSVERSION",
+ "code": "FSVERSION",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "text",
+ "description": "update_stamp",
+ "label": "update_stamp",
+ "code": "update_stamp",
+ "methodology": "adni-merge"
+ },
+ {
+ "type": "real",
+ "description": "TIV",
+ "label": "TIV",
+ "code": "TIV",
+ "methodology": "lren-nmm-volumes"
+ }
+ ],
+ "label": "no-group",
+ "code": "no-group"
+ }
+ ],
+ "label": "root",
+ "code": "root"
+}
\ No newline at end of file
--
GitLab