From 39055cdd57429dd4f33e9b43e26b6574bc2e488a Mon Sep 17 00:00:00 2001 From: Pau Andrio <andriopau@gmail.com> Date: Sat, 2 Sep 2023 15:09:45 +0200 Subject: [PATCH] 2023.3 Release v4.1.0 --- README.md | 4 +-- biobb_common/__init__.py | 2 +- biobb_common/docs/source/conf.py | 4 +-- biobb_common/docs/source/readme.md | 28 +++++++++++++++++---- biobb_common/docs/source/schema.html | 4 +-- biobb_common/json_schemas/biobb_common.json | 26 +++++++++---------- setup.py | 1 - 7 files changed, 43 insertions(+), 26 deletions(-) diff --git a/README.md b/README.md index 079c979..b4b0ba3 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [](https://anaconda.org/bioconda/biobb_common) [](https://anaconda.org/bioconda/biobb_common) [](https://quay.io/repository/biocontainers/biobb_common?tab=tags) -[](https://depot.galaxyproject.org/singularity/biobb_common:4.0.0--pyhdfd78af_0) +[](https://depot.galaxyproject.org/singularity/biobb_common:4.1.0--pyhdfd78af_0) []() []() @@ -35,7 +35,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v4.0.0 2023.1 +v4.1.0 2023.1 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). diff --git a/biobb_common/__init__.py b/biobb_common/__init__.py index a677fb4..273e9f4 100644 --- a/biobb_common/__init__.py +++ b/biobb_common/__init__.py @@ -1,2 +1,2 @@ name = "biobb_common" -__version__ = "4.0.0" +__version__ = "4.1.0" diff --git a/biobb_common/docs/source/conf.py b/biobb_common/docs/source/conf.py index f936e4f..50fc645 100644 --- a/biobb_common/docs/source/conf.py +++ b/biobb_common/docs/source/conf.py @@ -73,9 +73,9 @@ author = u'Bioexcel Project' # built documents. # The short X.Y version. -version = u'4.0.0' +version = u'4.1.0' # The full version, including alpha/beta/rc tags. -release = u'2023.1' +release = u'2023.3' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/biobb_common/docs/source/readme.md b/biobb_common/docs/source/readme.md index 89fd07e..b4b0ba3 100644 --- a/biobb_common/docs/source/readme.md +++ b/biobb_common/docs/source/readme.md @@ -1,8 +1,26 @@ -[](https://biobb-common.readthedocs.io/en/latest/?badge=latest) -[](https://anaconda.org/bioconda/biobb_common) -[](https://quay.io/repository/biocontainers/biobb_common?tab=tags) -[](https://depot.galaxyproject.org/singularity/biobb_common:3.9.0--pyhdfd78af_0) +[](https://GitHub.com/bioexcel/biobb_common/tags/) +[](https://pypi.python.org/pypi/biobb-common/) +[](https://anaconda.org/bioconda/biobb_common) +[](https://anaconda.org/bioconda/biobb_common) +[](https://quay.io/repository/biocontainers/biobb_common?tab=tags) +[](https://depot.galaxyproject.org/singularity/biobb_common:4.1.0--pyhdfd78af_0) + +[]() +[]() [](https://opensource.org/licenses/Apache-2.0) +[]() + +[](https://biobb-common.readthedocs.io/en/latest/?badge=latest) +[]() +[](https://www.youtube.com/watch?v=ou1DOGNs0xM) +[](https://doi.org/10.1038/s41597-019-0177-4) +[](https://www.nature.com/articles/s41597-019-0177-4#citeas) + +[]() +[]() +[]() +[](https://GitHub.com/bioexcel/biobb_common/issues/) + # biobb_common @@ -17,7 +35,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v4.0.0 2023.1 +v4.1.0 2023.1 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). diff --git a/biobb_common/docs/source/schema.html b/biobb_common/docs/source/schema.html index 246c1c4..dbd3b72 100644 --- a/biobb_common/docs/source/schema.html +++ b/biobb_common/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "4.0.0", + "softwareVersion": "4.1.0", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_common", "isAccessibleForFree": "True", @@ -22,4 +22,4 @@ "priceCurrency":"EUR" } } -</script> +</script> \ No newline at end of file diff --git a/biobb_common/json_schemas/biobb_common.json b/biobb_common/json_schemas/biobb_common.json index e36a50e..f62896c 100644 --- a/biobb_common/json_schemas/biobb_common.json +++ b/biobb_common/json_schemas/biobb_common.json @@ -6,25 +6,25 @@ "conda": "https://anaconda.org/bioconda/biobb_common", "docker": "https://quay.io/biocontainers/biobb_common:3.8.1--pyhdfd78af_0", "singularity": "https://depot.galaxyproject.org/singularity/biobb_common:3.8.1--pyhdfd78af_0", - "version": "4.0.0", - "tools" : [ + "version": "4.1.0", + "tools": [ { - "block" : "", - "tool" : "in house", - "desc" : "Biobb Base structure & common elements." + "block": "", + "tool": "in house", + "desc": "Biobb Base structure & common elements." } ], - "dep_pypi" : [ - "install_requires=['pyyaml', 'requests', 'biopython==1.79']", - "python_requires='>=3.7,<=3.10'" + "dep_pypi": [ + "install_requires=['pyyaml', 'requests', 'biopython']", + "python_requires='>=3.8'" ], - "dep_conda" : [ - "python >=3.7,<=3.10", + "dep_conda": [ + "python >=3.8", "pyyaml", "requests", - "biopython ==1.79" + "biopython" ], - "keywords" : [ + "keywords": [ "common" ] -} +} \ No newline at end of file diff --git a/setup.py b/setup.py index 7e4be79..5bf91bc 100644 --- a/setup.py +++ b/setup.py @@ -22,7 +22,6 @@ setuptools.setup( python_requires=">=3.8", classifiers=[ "Development Status :: 5 - Production/Stable", - "Programming Language :: Python :: 3.7", "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", -- GitLab