From 25914fc6420475204e5e3caaf53adf3bc57fcb37 Mon Sep 17 00:00:00 2001
From: Pau Andrio <andriopau@gmail.com>
Date: Mon, 29 Aug 2022 13:17:57 +0200
Subject: [PATCH] Update biobb_common 3.8.1
---
README.md | 2 +-
biobb_common/__init__.py | 2 +-
biobb_common/docs/source/conf.py | 2 +-
biobb_common/docs/source/readme.md | 2 +-
biobb_common/docs/source/schema.html | 2 +-
biobb_common/generic/biobb_object.py | 3 ++-
biobb_common/json_schemas/biobb_common.json | 2 +-
biobb_common/tools/file_utils.py | 2 +-
setup.py | 2 +-
9 files changed, 10 insertions(+), 9 deletions(-)
diff --git a/README.md b/README.md
index fd153cd..21e7a0b 100644
--- a/README.md
+++ b/README.md
@@ -16,7 +16,7 @@ The latest documentation of this package can be found in our readthedocs site:
[latest API documentation](http://biobb_common.readthedocs.io/en/latest/).
### Version
-v3.8.0 2022.3
+v3.8.1 2022.3
### Copyright & Licensing
This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
diff --git a/biobb_common/__init__.py b/biobb_common/__init__.py
index 6d30d89..3fe3e64 100644
--- a/biobb_common/__init__.py
+++ b/biobb_common/__init__.py
@@ -1,2 +1,2 @@
name = "biobb_common"
-__version__ = "3.8.0"
\ No newline at end of file
+__version__ = "3.8.1"
diff --git a/biobb_common/docs/source/conf.py b/biobb_common/docs/source/conf.py
index 3464b9e..43039d5 100644
--- a/biobb_common/docs/source/conf.py
+++ b/biobb_common/docs/source/conf.py
@@ -75,7 +75,7 @@ author = u'Bioexcel Project'
# built documents.
#
# The short X.Y version.
-version = u'3.8.0'
+version = u'3.8.1'
# The full version, including alpha/beta/rc tags.
release = u'2022.3'
diff --git a/biobb_common/docs/source/readme.md b/biobb_common/docs/source/readme.md
index fd153cd..21e7a0b 100644
--- a/biobb_common/docs/source/readme.md
+++ b/biobb_common/docs/source/readme.md
@@ -16,7 +16,7 @@ The latest documentation of this package can be found in our readthedocs site:
[latest API documentation](http://biobb_common.readthedocs.io/en/latest/).
### Version
-v3.8.0 2022.3
+v3.8.1 2022.3
### Copyright & Licensing
This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).
diff --git a/biobb_common/docs/source/schema.html b/biobb_common/docs/source/schema.html
index 085dd87..1a32b13 100644
--- a/biobb_common/docs/source/schema.html
+++ b/biobb_common/docs/source/schema.html
@@ -10,7 +10,7 @@
"applicationSubCategory": "http://www.edamontology.org/topic_3892",
"citation": "https://www.nature.com/articles/s41597-019-0177-4",
"license": "https://www.apache.org/licenses/LICENSE-2.0",
- "softwareVersion": "3.8.0",
+ "softwareVersion": "3.8.1",
"applicationSuite": "BioBB BioExcel Building Blocks",
"codeRepository": "https://github.com/bioexcel/biobb_common",
"isAccessibleForFree": "True",
diff --git a/biobb_common/generic/biobb_object.py b/biobb_common/generic/biobb_object.py
index 735c52e..cab5bd0 100644
--- a/biobb_common/generic/biobb_object.py
+++ b/biobb_common/generic/biobb_object.py
@@ -195,7 +195,8 @@ class BiobbObject:
self.cmd = pcocc_cmd + cmd
else:
- fu.log('Not using any container', self.out_log, self.global_log)
+ pass
+ #fu.log('Not using any container', self.out_log, self.global_log)
def execute_command(self):
self.return_code = cmd_wrapper.CmdWrapper(self.cmd, self.out_log, self.err_log, self.global_log, self.environment).launch()
diff --git a/biobb_common/json_schemas/biobb_common.json b/biobb_common/json_schemas/biobb_common.json
index abf0a6a..44ac08d 100644
--- a/biobb_common/json_schemas/biobb_common.json
+++ b/biobb_common/json_schemas/biobb_common.json
@@ -6,7 +6,7 @@
"conda": "https://anaconda.org/bioconda/biobb_common",
"docker": "https://quay.io/biocontainers/biobb_common",
"singularity": "https://www.singularity-hub.org/collections/2734/usage",
- "version": "3.8.0",
+ "version": "3.8.1",
"tools" : [
{
"block" : "",
diff --git a/biobb_common/tools/file_utils.py b/biobb_common/tools/file_utils.py
index a6d9984..0236bf1 100644
--- a/biobb_common/tools/file_utils.py
+++ b/biobb_common/tools/file_utils.py
@@ -542,5 +542,5 @@ def create_cmd_line(cmd: typing.Iterable[str], container_path: str = '', host_vo
return pcocc_cmd + cmd
else:
- log('Not using any container', out_log, global_log)
+ #log('Not using any container', out_log, global_log)
return cmd
diff --git a/setup.py b/setup.py
index 69b5802..0cc69e2 100644
--- a/setup.py
+++ b/setup.py
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
setuptools.setup(
name="biobb_common",
- version="3.8.0",
+ version="3.8.1",
author="Biobb developers",
author_email="pau.andrio@bsc.es",
description="Biobb_common is the base package required to use the biobb packages.",
--
GitLab