diff --git a/README.md b/README.md index fd153cda756849f9748293f44994f5a06a0f54bb..21e7a0b58a35cd231e74392208efe6da3e524a68 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v3.8.0 2022.3 +v3.8.1 2022.3 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). diff --git a/biobb_common/__init__.py b/biobb_common/__init__.py index 6d30d89f663d98e811fa8730e3d44b097e7a937d..3fe3e645fa110da08366562e87ea29f0d2ec3377 100644 --- a/biobb_common/__init__.py +++ b/biobb_common/__init__.py @@ -1,2 +1,2 @@ name = "biobb_common" -__version__ = "3.8.0" \ No newline at end of file +__version__ = "3.8.1" diff --git a/biobb_common/docs/source/conf.py b/biobb_common/docs/source/conf.py index 3464b9e4386cb01880e6791c13e73681c8b41585..43039d59fc0baded513fa7844fc2e60043ea8e93 100644 --- a/biobb_common/docs/source/conf.py +++ b/biobb_common/docs/source/conf.py @@ -75,7 +75,7 @@ author = u'Bioexcel Project' # built documents. # # The short X.Y version. -version = u'3.8.0' +version = u'3.8.1' # The full version, including alpha/beta/rc tags. release = u'2022.3' diff --git a/biobb_common/docs/source/readme.md b/biobb_common/docs/source/readme.md index fd153cda756849f9748293f44994f5a06a0f54bb..21e7a0b58a35cd231e74392208efe6da3e524a68 100644 --- a/biobb_common/docs/source/readme.md +++ b/biobb_common/docs/source/readme.md @@ -16,7 +16,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v3.8.0 2022.3 +v3.8.1 2022.3 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). diff --git a/biobb_common/docs/source/schema.html b/biobb_common/docs/source/schema.html index 085dd87e92c6ff78c1da74b89be2c6db0a44406a..1a32b133b8fc1506424255c325f5c3339c1cc07a 100644 --- a/biobb_common/docs/source/schema.html +++ b/biobb_common/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "3.8.0", + "softwareVersion": "3.8.1", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_common", "isAccessibleForFree": "True", diff --git a/biobb_common/generic/biobb_object.py b/biobb_common/generic/biobb_object.py index 735c52ecb4066a6de72b8fe2635ec95bd2f43693..cab5bd0d846db8a7ba177f13f8635458cb501bac 100644 --- a/biobb_common/generic/biobb_object.py +++ b/biobb_common/generic/biobb_object.py @@ -195,7 +195,8 @@ class BiobbObject: self.cmd = pcocc_cmd + cmd else: - fu.log('Not using any container', self.out_log, self.global_log) + pass + #fu.log('Not using any container', self.out_log, self.global_log) def execute_command(self): self.return_code = cmd_wrapper.CmdWrapper(self.cmd, self.out_log, self.err_log, self.global_log, self.environment).launch() diff --git a/biobb_common/json_schemas/biobb_common.json b/biobb_common/json_schemas/biobb_common.json index abf0a6a69045421a0d33dd1272263e76b31d2204..44ac08de5c0c8cfe979069e48a0e5e68c469ad05 100644 --- a/biobb_common/json_schemas/biobb_common.json +++ b/biobb_common/json_schemas/biobb_common.json @@ -6,7 +6,7 @@ "conda": "https://anaconda.org/bioconda/biobb_common", "docker": "https://quay.io/biocontainers/biobb_common", "singularity": "https://www.singularity-hub.org/collections/2734/usage", - "version": "3.8.0", + "version": "3.8.1", "tools" : [ { "block" : "", diff --git a/biobb_common/tools/file_utils.py b/biobb_common/tools/file_utils.py index a6d99846aafeffcf126c6273b7dddbc552346775..0236bf1cf44d1bc4672939d709a5a6c11152eccb 100644 --- a/biobb_common/tools/file_utils.py +++ b/biobb_common/tools/file_utils.py @@ -542,5 +542,5 @@ def create_cmd_line(cmd: typing.Iterable[str], container_path: str = '', host_vo return pcocc_cmd + cmd else: - log('Not using any container', out_log, global_log) + #log('Not using any container', out_log, global_log) return cmd diff --git a/setup.py b/setup.py index 69b5802cb50acf140045c14b56ecc55d8a723371..0cc69e2de1eca44d78634d3978c972057afba103 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ with open("README.md", "r") as fh: setuptools.setup( name="biobb_common", - version="3.8.0", + version="3.8.1", author="Biobb developers", author_email="pau.andrio@bsc.es", description="Biobb_common is the base package required to use the biobb packages.",