diff --git a/README.md b/README.md index 510fbe8ccac19f0646a7bfacff64d9a0e9793e7d..9ab53037dd68254508d31eb56da49a9dc8592ffc 100644 --- a/README.md +++ b/README.md @@ -17,13 +17,13 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v2.0.1 2019.4 +v3.0.0 2020.4 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). -* (c) 2015-2019 [Barcelona Supercomputing Center](https://www.bsc.es/) -* (c) 2015-2019 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) +* (c) 2015-2020 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2020 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. diff --git a/biobb_common/docs/source/readme.md b/biobb_common/docs/source/readme.md index 510fbe8ccac19f0646a7bfacff64d9a0e9793e7d..9ab53037dd68254508d31eb56da49a9dc8592ffc 100644 --- a/biobb_common/docs/source/readme.md +++ b/biobb_common/docs/source/readme.md @@ -17,13 +17,13 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_common.readthedocs.io/en/latest/). ### Version -v2.0.1 2019.4 +v3.0.0 2020.4 ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)). -* (c) 2015-2019 [Barcelona Supercomputing Center](https://www.bsc.es/) -* (c) 2015-2019 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) +* (c) 2015-2020 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2020 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. diff --git a/biobb_common/json_schemas/biobb_common.json b/biobb_common/json_schemas/biobb_common.json index 66eeee6b0fb1285a6254fc5ed18b63975b287d33..f263933728b366b82f92907d9301d9010526b145 100644 --- a/biobb_common/json_schemas/biobb_common.json +++ b/biobb_common/json_schemas/biobb_common.json @@ -6,25 +6,25 @@ "conda": "https://anaconda.org/bioconda/biobb_common", "docker": "https://quay.io/repository/biocontainers/biobb_common", "singularity": "https://www.singularity-hub.org/collections/2734/usage", - "version": "2.0.1", + "version": "3.0.0", "tools" : [ { - "block" : "", - "tool" : "in house", + "block" : "", + "tool" : "in house", "desc" : "Biobb Base structure & common elements." } ], "dep_pypi" : [ - "install_requires=['pyyaml', 'requests', 'biopython==1.73']", - "python_requires='==3.6.*'" - ], + "install_requires=['pyyaml', 'requests', 'biopython==1.76']", + "python_requires='==3.7.*'" + ], "dep_conda" : [ - "python ==3.6.*", + "python ==3.7.*", "pyyaml", "requests", - "biopython ==1.73" + "biopython ==1.76" ], "keywords" : [ "common" ] -} \ No newline at end of file +} diff --git a/biobb_common/tools/file_utils.py b/biobb_common/tools/file_utils.py index 5269aadec9796c228afa1d649c9c3f72e3ac15ba..05a25d32834ac611b0c2f4288cb1a48b1d8f81be 100644 --- a/biobb_common/tools/file_utils.py +++ b/biobb_common/tools/file_utils.py @@ -95,7 +95,7 @@ def zip_list(zip_file: str, file_list: typing.List[str], out_log: logging.Logger Args: zip_file (str): Output compressed zip file. file_list (:obj:`list` of :obj:`str`): Input list of files to be compressed. - out_log (:obj:`Logger`): Input log object. + out_log (:obj:`logging.Logger`): Input log object. """ file_list.sort() with zipfile.ZipFile(zip_file, 'w') as zip_f: diff --git a/setup.py b/setup.py index ed5a59c20bde95bbdb132ac256dd5c4f7f7f27be..df536bdc6a2a0142142c23e8c531b95f74511b23 100644 --- a/setup.py +++ b/setup.py @@ -22,7 +22,7 @@ setuptools.setup( python_requires='==3.7.*', classifiers=( "Development Status :: 3 - Alpha", - "Programming Language :: Python :: 3.6", + "Programming Language :: Python :: 3.7", "License :: OSI Approved :: Apache Software License", "Operating System :: MacOS :: MacOS X", "Operating System :: POSIX",