#include <pybind11/pybind11.h> #include <pybind11/numpy.h> #include <arbor/spike.hpp> #include <arbor/common_types.hpp> #include <arbor/version.hpp> #include "pyarb.hpp" // Forward declarations of functions used to register API // types and functions to be exposed to Python. namespace pyarb { void register_cable_loader(pybind11::module& m); void register_cable_probes(pybind11::module& m, pyarb_global_ptr); void register_cells(pybind11::module& m); void register_config(pybind11::module& m); void register_contexts(pybind11::module& m); void register_domain_decomposition(pybind11::module& m); void register_event_generators(pybind11::module& m); void register_identifiers(pybind11::module& m); void register_mechanisms(pybind11::module& m); void register_morphology(pybind11::module& m); void register_profiler(pybind11::module& m); void register_recipe(pybind11::module& m); void register_schedules(pybind11::module& m); void register_simulation(pybind11::module& m, pyarb_global_ptr); void register_single_cell(pybind11::module& m); void register_spike_handling(pybind11::module& m); #ifdef ARB_MPI_ENABLED void register_mpi(pybind11::module& m); #endif } // namespace pyarb PYBIND11_MODULE(_arbor, m) { pyarb::pyarb_global_ptr global_ptr(new pyarb::pyarb_global); // Register NumPy structured datatypes for Arbor structures used in NumPy array outputs. PYBIND11_NUMPY_DTYPE(arb::cell_member_type, gid, index); PYBIND11_NUMPY_DTYPE(arb::spike, source, time); m.doc() = "arbor: multicompartment neural network models."; m.attr("__version__") = ARB_VERSION; pyarb::register_cable_loader(m); pyarb::register_cable_probes(m, global_ptr); pyarb::register_cells(m); pyarb::register_config(m); pyarb::register_contexts(m); pyarb::register_domain_decomposition(m); pyarb::register_event_generators(m); pyarb::register_identifiers(m); pyarb::register_mechanisms(m); pyarb::register_morphology(m); pyarb::register_profiler(m); pyarb::register_recipe(m); pyarb::register_schedules(m); pyarb::register_simulation(m, global_ptr); pyarb::register_single_cell(m); pyarb::register_spike_handling(m); #ifdef ARB_MPI_ENABLED pyarb::register_mpi(m); #endif }