diff --git a/miniapp/io.cpp b/miniapp/io.cpp
index 722a754d7c6fb97952422aa77bee80c76ab36a62..93a8d5e0d35b45b23c78daa4fdba280cd02d0cf4 100644
--- a/miniapp/io.cpp
+++ b/miniapp/io.cpp
@@ -60,7 +60,7 @@ cl_options read_options(int argc, char** argv) {
options.all_to_all = all_to_all_arg.getValue();
}
// catch any exceptions in command line handling
- catch (TCLAP::ArgException &e) {
+ catch (TCLAP::ArgException& e) {
throw usage_error("error parsing command line argument "+e.argId()+": "+e.error());
}
@@ -79,7 +79,7 @@ cl_options read_options(int argc, char** argv) {
options.tfinal = fopts["tfinal"];
options.all_to_all = fopts["all_to_all"];
}
- catch(std::exception &e) {
+ catch (std::exception& e) {
throw model_description_error(
"unable to parse parameters in "+options.ifname+": "+e.what());
}
diff --git a/miniapp/trace_sampler.hpp b/miniapp/trace_sampler.hpp
index 2e10257a12883e2dd9f8c69d2a2894cdbc001ea6..96ad269afed90551f710fe57c3651b58db3304fd 100644
--- a/miniapp/trace_sampler.hpp
+++ b/miniapp/trace_sampler.hpp
@@ -29,7 +29,7 @@ struct sample_trace {
std::vector<sample_type> samples;
sample_trace() =default;
- sample_trace(cell_member_type probe_id, const std::string &name, const std::string &units):
+ sample_trace(cell_member_type probe_id, const std::string& name, const std::string& units):
name(name), units(units), probe_id(probe_id)
{}
};
diff --git a/src/algorithms.hpp b/src/algorithms.hpp
index 60fd0863e8770586764fb6129dee5f1699f57298..65cbf4b60c973a6b9ca987a0399a3803cddc8459 100644
--- a/src/algorithms.hpp
+++ b/src/algorithms.hpp
@@ -121,7 +121,7 @@ bool is_positive(C const& c)
}
template<typename C>
-bool has_contiguous_segments(const C &parent_index)
+bool has_contiguous_segments(const C& parent_index)
{
static_assert(
std::is_integral<typename C::value_type>::value,
@@ -151,7 +151,7 @@ bool has_contiguous_segments(const C &parent_index)
}
template<typename C>
-std::vector<typename C::value_type> child_count(const C &parent_index)
+std::vector<typename C::value_type> child_count(const C& parent_index)
{
static_assert(
std::is_integral<typename C::value_type>::value,
@@ -229,7 +229,7 @@ typename C::value_type find_branch(const C& branch_index,
auto it = std::find_if(
branch_index.begin(), branch_index.end(),
- [nid](const value_type &v) { return v > nid; }
+ [nid](const value_type& v) { return v > nid; }
);
return it - branch_index.begin() - 1;
diff --git a/src/catypes.hpp b/src/catypes.hpp
index 0337c0ac2831f1fde39b56f86d71fa7b6d36129c..e2e9799be3dbb7d4a91a75e01c8adf2eaa5a565e 100644
--- a/src/catypes.hpp
+++ b/src/catypes.hpp
@@ -35,4 +35,4 @@ DEFINE_LEXICOGRAPHIC_ORDERING(cell_member_type,(a.gid,a.index),(b.gid,b.index))
} // namespace mc
} // namespace nest
-std::ostream &operator<<(std::ostream& O, nest::mc::cell_member_type m);
+std::ostream& operator<<(std::ostream& O, nest::mc::cell_member_type m);
diff --git a/src/catypes_io.cpp b/src/catypes_io.cpp
index ea5ab59fb6ac0a5cc134b613818797985c05593f..4c9d185f0bf68a2cd1c9ba8cbe67df26f614631d 100644
--- a/src/catypes_io.cpp
+++ b/src/catypes_io.cpp
@@ -2,7 +2,7 @@
#include <catypes.hpp>
-std::ostream &operator<<(std::ostream& O, nest::mc::cell_member_type m) {
+std::ostream& operator<<(std::ostream& O, nest::mc::cell_member_type m) {
return O << m.gid << ':' << m.index;
}
diff --git a/src/cell.cpp b/src/cell.cpp
index cf4dd478367c318c6a3405eeb61f437fc0b68f46..e96cae69aca834d61d81c9c53c9488532a3b5b69 100644
--- a/src/cell.cpp
+++ b/src/cell.cpp
@@ -159,7 +159,7 @@ std::vector<cell::size_type> cell::compartment_counts() const
cell::size_type cell::num_compartments() const
{
auto n = 0u;
- for(auto &s : segments_) {
+ for(auto& s : segments_) {
n += s->num_compartments();
}
return n;
diff --git a/src/fvm_cell.hpp b/src/fvm_cell.hpp
index 1717638931be43fde399db56ec1a7210e39616a3..526fd22a391b477d5af3c88a4535b4721c83cbfe 100644
--- a/src/fvm_cell.hpp
+++ b/src/fvm_cell.hpp
@@ -349,7 +349,7 @@ fvm_cell<T, I>::fvm_cell(nest::mc::cell const& cell)
syn_map[syn.mechanism.name()].push_back(find_compartment_index(syn.location, graph));
}
- for (const auto &syni : syn_map) {
+ for (const auto& syni : syn_map) {
const auto& mech_name = syni.first;
// auto& helper = nest::mc::mechanisms::get_mechanism_helper(mech_name);
diff --git a/src/mechanism_catalogue.hpp b/src/mechanism_catalogue.hpp
index ef0b4ed8db8134456871bcb84eb9e134cfd26992..c9d3e6de2771a1b18fa05f104dd257b8c7fe6dd9 100644
--- a/src/mechanism_catalogue.hpp
+++ b/src/mechanism_catalogue.hpp
@@ -19,7 +19,12 @@ struct catalogue {
using view_type = typename mechanism<T, I>::view_type;
using index_view = typename mechanism<T, I>::index_view;
- static mechanism_ptr<T, I> make(const std::string &name, view_type vec_v, view_type vec_i, index_view node_indices) {
+ static mechanism_ptr<T, I> make(
+ const std::string& name,
+ view_type vec_v,
+ view_type vec_i,
+ index_view node_indices)
+ {
auto entry = mech_map.find(name);
if (entry==mech_map.end()) {
throw std::out_of_range("no such mechanism");
@@ -28,7 +33,7 @@ struct catalogue {
return entry->second(vec_v, vec_i, node_indices);
}
- static bool has(const std::string &name) {
+ static bool has(const std::string& name) {
return mech_map.count(name)>0;
}
diff --git a/src/model.hpp b/src/model.hpp
index 556121adfb42a4d32aed01c76537e9b78b9febc8..e819ff8b180beea18d5c0e745793bba1ef6aa8a5 100644
--- a/src/model.hpp
+++ b/src/model.hpp
@@ -29,7 +29,7 @@ public:
probe_spec probe;
};
- model(const recipe &rec, cell_gid_type cell_from, cell_gid_type cell_to):
+ model(const recipe& rec, cell_gid_type cell_from, cell_gid_type cell_to):
cell_from_(cell_from),
cell_to_(cell_to),
communicator_(cell_from, cell_to)
@@ -78,7 +78,7 @@ public:
threading::parallel_for::apply(
0u, cell_groups_.size(),
[&](unsigned i) {
- auto &group = cell_groups_[i];
+ auto& group = cell_groups_[i];
PE("stepping","events");
group.enqueue_events(communicator_.queue(i));
diff --git a/src/profiling/profiler.cpp b/src/profiling/profiler.cpp
index b5d2ad0d8d7bd9efe7fd8e55e5f6720ab051b3f1..1e30449ab4b225385570292bea527fbcc6981c3d 100644
--- a/src/profiling/profiler.cpp
+++ b/src/profiling/profiler.cpp
@@ -66,7 +66,7 @@ void profiler_node::print_sub(
if (print_children) {
auto other = 0.;
- for (auto &n : children) {
+ for (auto& n : children) {
if (n.value<threshold || n.name=="other") {
other += n.value;
}
@@ -162,7 +162,7 @@ double region_type::subregion_contributions() const {
profiler_node region_type::populate_performance_tree() const {
profiler_node tree(total(), name());
- for (auto &it : subregions_) {
+ for (auto& it : subregions_) {
tree.children.push_back(it.second->populate_performance_tree());
}
diff --git a/src/segment.hpp b/src/segment.hpp
index b53d21be5b160cff9ab36d8886d8ea9422238dc6..a7600da948dfec79dfc600d9099b421accfd1aae 100644
--- a/src/segment.hpp
+++ b/src/segment.hpp
@@ -208,7 +208,7 @@ public:
mechanisms_.push_back(membrane_parameters());
}
- soma_segment(value_type r, point_type const &c)
+ soma_segment(value_type r, point_type const& c)
: soma_segment(r)
{
center_ = c;
diff --git a/src/threading/serial.hpp b/src/threading/serial.hpp
index 297f8266410ef334327856178346edb8a0d66607..8d9c4d64fd84805ed0909ad704ffc192bd0da748 100644
--- a/src/threading/serial.hpp
+++ b/src/threading/serial.hpp
@@ -7,6 +7,7 @@
#include <array>
#include <chrono>
#include <string>
+#include <vector>
namespace nest {
namespace mc {
diff --git a/src/util.hpp b/src/util.hpp
index 29a6b28a9ec09cce13fcced0db20ae30aa3d803f..243987e628685ee4d4414394b054bebc6e7646a0 100644
--- a/src/util.hpp
+++ b/src/util.hpp
@@ -18,7 +18,7 @@ using memory::util::cyan;
template <typename T>
std::ostream&
-operator << (std::ostream &o, std::vector<T>const& v)
+operator << (std::ostream& o, std::vector<T>const& v)
{
o << "[";
for(auto const& i: v) {
@@ -29,7 +29,7 @@ operator << (std::ostream &o, std::vector<T>const& v)
}
template <typename T>
-std::ostream& print(std::ostream &o, std::vector<T>const& v)
+std::ostream& print(std::ostream& o, std::vector<T>const& v)
{
o << "[";
for(auto const& i: v) {
diff --git a/src/util/debug.hpp b/src/util/debug.hpp
index 1d0ef63346068876f8366a0d423a8887fe4a7470..f258b37123755c7ec7a7324641249ed35290e8bb 100644
--- a/src/util/debug.hpp
+++ b/src/util/debug.hpp
@@ -11,7 +11,7 @@ namespace mc {
namespace util {
bool failed_assertion(const char* assertion, const char* file, int line, const char* func);
-std::ostream &debug_emit_trace_leader(std::ostream& out, const char* file, int line, const char* varlist);
+std::ostream& debug_emit_trace_leader(std::ostream& out, const char* file, int line, const char* varlist);
inline void debug_emit(std::ostream& out) {
out << "\n";
diff --git a/src/util/lexcmp_def.hpp b/src/util/lexcmp_def.hpp
index d1c3e8a3bfc63341070b55b1320de03583797bbe..cfb297b1d16d3dbd7023bb7f300271eda0af1e41 100644
--- a/src/util/lexcmp_def.hpp
+++ b/src/util/lexcmp_def.hpp
@@ -20,7 +20,7 @@
#include <tuple>
#define DEFINE_LEXICOGRAPHIC_ORDERING_IMPL_(proxy,op,type,a_fields,b_fields) \
-inline bool operator op(const type &a,const type &b) { return proxy a_fields op proxy b_fields; }
+inline bool operator op(const type& a,const type& b) { return proxy a_fields op proxy b_fields; }
#define DEFINE_LEXICOGRAPHIC_ORDERING(type,a_fields,b_fields) \
DEFINE_LEXICOGRAPHIC_ORDERING_IMPL_(std::tie,<,type,a_fields,b_fields) \
diff --git a/src/util/optional.hpp b/src/util/optional.hpp
index 92191dfff7adf9af084a2984b19210565da761e4..6b4d0f8b66cbdcf24c59914466a01621895ca2bb 100644
--- a/src/util/optional.hpp
+++ b/src/util/optional.hpp
@@ -29,7 +29,7 @@ namespace util {
template <typename X> struct optional;
struct optional_unset_error: std::runtime_error {
- explicit optional_unset_error(const std::string &what_str)
+ explicit optional_unset_error(const std::string& what_str)
: std::runtime_error(what_str)
{}
@@ -39,7 +39,7 @@ struct optional_unset_error: std::runtime_error {
};
struct optional_invalid_dereference: std::runtime_error {
- explicit optional_invalid_dereference(const std::string &what_str)
+ explicit optional_invalid_dereference(const std::string& what_str)
: std::runtime_error(what_str)
{}
diff --git a/tests/unit/test_optional.cpp b/tests/unit/test_optional.cpp
index 35b74a470cea3e82a230592454126d04ce092da9..4610f0c48cf6b317f97e8a895f9bb09245ee7220 100644
--- a/tests/unit/test_optional.cpp
+++ b/tests/unit/test_optional.cpp
@@ -24,24 +24,30 @@ TEST(optionalm,unset_throw) {
optional<int> a;
int check=10;
- try { a.get(); }
- catch(optional_unset_error &e) {
+ try {
+ a.get();
+ }
+ catch (optional_unset_error& e) {
++check;
}
EXPECT_EQ(11,check);
check=20;
a=2;
- try { a.get(); }
- catch(optional_unset_error &e) {
+ try {
+ a.get();
+ }
+ catch (optional_unset_error& e) {
++check;
}
EXPECT_EQ(20,check);
check=30;
a.reset();
- try { a.get(); }
- catch(optional_unset_error &e) {
+ try {
+ a.get();
+ }
+ catch (optional_unset_error& e) {
++check;
}
EXPECT_EQ(31,check);
@@ -66,13 +72,13 @@ TEST(optionalm,ctor_conv) {
TEST(optionalm,ctor_ref) {
int v=10;
- optional<int &> a(v);
+ optional<int&> a(v);
EXPECT_EQ(10,a.get());
v=20;
EXPECT_EQ(20,a.get());
- optional<int &> b(a),c=b,d=v;
+ optional<int&> b(a),c=b,d=v;
EXPECT_EQ(&(a.get()),&(b.get()));
EXPECT_EQ(&(a.get()),&(c.get()));
EXPECT_EQ(&(a.get()),&(d.get()));
@@ -110,13 +116,13 @@ struct nomove {
nomove(): value(0) {}
nomove(int i): value(i) {}
- nomove(const nomove &n): value(n.value) {}
- nomove(nomove &&n) = delete;
+ nomove(const nomove& n): value(n.value) {}
+ nomove(nomove&& n) = delete;
- nomove &operator=(const nomove &n) { value=n.value; return *this; }
+ nomove& operator=(const nomove& n) { value=n.value; return *this; }
- bool operator==(const nomove &them) const { return them.value==value; }
- bool operator!=(const nomove &them) const { return !(*this==them); }
+ bool operator==(const nomove& them) const { return them.value==value; }
+ bool operator!=(const nomove& them) const { return !(*this==them); }
};
TEST(optionalm,ctor_nomove) {
@@ -136,21 +142,21 @@ struct nocopy {
nocopy(): value(0) {}
nocopy(int i): value(i) {}
- nocopy(const nocopy &n) = delete;
- nocopy(nocopy &&n) {
+ nocopy(const nocopy& n) = delete;
+ nocopy(nocopy&& n) {
value=n.value;
n.value=0;
}
- nocopy &operator=(const nocopy &n) = delete;
- nocopy &operator=(nocopy &&n) {
+ nocopy& operator=(const nocopy& n) = delete;
+ nocopy& operator=(nocopy&& n) {
value=n.value;
n.value=-1;
return *this;
}
- bool operator==(const nocopy &them) const { return them.value==value; }
- bool operator!=(const nocopy &them) const { return !(*this==them); }
+ bool operator==(const nocopy& them) const { return them.value==value; }
+ bool operator!=(const nocopy& them) const { return !(*this==them); }
};
TEST(optionalm,ctor_nocopy) {
@@ -251,13 +257,13 @@ TEST(optionalm,bind_to_optional_void) {
TEST(optionalm,bind_with_ref) {
optional<int> a=10;
- a >> [](int &v) {++v; };
+ a >> [](int& v) { ++v; };
EXPECT_EQ(11,*a);
}
struct check_cref {
- int operator()(const int &) { return 10; }
- int operator()(int &) { return 11; }
+ int operator()(const int&) { return 10; }
+ int operator()(int&) { return 11; }
};
TEST(optionalm,bind_constness) {
diff --git a/tests/unit/test_parameters.cpp b/tests/unit/test_parameters.cpp
index 0781640489725a100b3e4ede3be40dfe168b1cef..a573e07cd9fce4581d2bd6b026e1499f94336d1d 100644
--- a/tests/unit/test_parameters.cpp
+++ b/tests/unit/test_parameters.cpp
@@ -28,7 +28,7 @@ TEST(parameters, setting)
EXPECT_FALSE(list.add_parameter({"b", -3.0}));
EXPECT_EQ(list.num_parameters(), 2);
- auto &parms = list.parameters();
+ auto& parms = list.parameters();
EXPECT_EQ(parms[0].name, "a");
EXPECT_EQ(parms[0].value, 0.12);
EXPECT_EQ(parms[0].range.min, 0);
diff --git a/tests/unit/test_uninitialized.cpp b/tests/unit/test_uninitialized.cpp
index dcc9e47ce6a7fa266376e054e8f84a04d8ec818d..1f04510d7df6af054eaec854d7e0c954ad5e73c8 100644
--- a/tests/unit/test_uninitialized.cpp
+++ b/tests/unit/test_uninitialized.cpp
@@ -7,16 +7,16 @@ using namespace nest::mc::util;
namespace {
struct count_ops {
count_ops() {}
- count_ops(const count_ops &n) { ++copy_ctor_count; }
- count_ops(count_ops &&n) { ++move_ctor_count; }
+ count_ops(const count_ops& n) { ++copy_ctor_count; }
+ count_ops(count_ops&& n) { ++move_ctor_count; }
- count_ops &operator=(const count_ops &n) { ++copy_assign_count; return *this; }
- count_ops &operator=(count_ops &&n) { ++move_assign_count; return *this; }
+ count_ops& operator=(const count_ops& n) { ++copy_assign_count; return *this; }
+ count_ops& operator=(count_ops&& n) { ++move_assign_count; return *this; }
static int copy_ctor_count,copy_assign_count;
static int move_ctor_count,move_assign_count;
static void reset_counts() {
- copy_ctor_count=copy_assign_count=0;
+ copy_ctor_count=copy_assign_count=0;
move_ctor_count=move_assign_count=0;
}
};
@@ -53,11 +53,11 @@ TEST(uninitialized,ctor) {
namespace {
struct nocopy {
nocopy() {}
- nocopy(const nocopy &n) = delete;
- nocopy(nocopy &&n) { ++move_ctor_count; }
+ nocopy(const nocopy& n) = delete;
+ nocopy(nocopy&& n) { ++move_ctor_count; }
- nocopy &operator=(const nocopy &n) = delete;
- nocopy &operator=(nocopy &&n) { ++move_assign_count; return *this; }
+ nocopy& operator=(const nocopy& n) = delete;
+ nocopy& operator=(nocopy&& n) { ++move_assign_count; return *this; }
static int move_ctor_count,move_assign_count;
static void reset_counts() { move_ctor_count=move_assign_count=0; }
@@ -85,11 +85,11 @@ TEST(uninitialized,ctor_nocopy) {
namespace {
struct nomove {
nomove() {}
- nomove(const nomove &n) { ++copy_ctor_count; }
- nomove(nomove &&n) = delete;
+ nomove(const nomove& n) { ++copy_ctor_count; }
+ nomove(nomove&& n) = delete;
- nomove &operator=(const nomove &n) { ++copy_assign_count; return *this; }
- nomove &operator=(nomove &&n) = delete;
+ nomove& operator=(const nomove& n) { ++copy_assign_count; return *this; }
+ nomove& operator=(nomove&& n) = delete;
static int copy_ctor_count,copy_assign_count;
static void reset_counts() { copy_ctor_count=copy_assign_count=0; }
@@ -129,7 +129,7 @@ TEST(uninitialized,void) {
}
TEST(uninitialized,ref) {
- uninitialized<int &> x,y;
+ uninitialized<int&> x,y;
int a;
x.construct(a);
@@ -151,8 +151,8 @@ namespace {
mutable int op_count=0;
mutable int const_op_count=0;
- int operator()(const int &a) const { ++const_op_count; return a+1; }
- int operator()(int &a) const { ++op_count; return ++a; }
+ int operator()(const int& a) const { ++const_op_count; return a+1; }
+ int operator()(int& a) const { ++op_count; return ++a; }
};
}
@@ -165,14 +165,14 @@ TEST(uninitialized,apply) {
EXPECT_EQ(11,ua.cref());
EXPECT_EQ(11,r);
- uninitialized<int &> ub;
+ uninitialized<int&> ub;
ub.construct(ua.ref());
r=ub.apply(A);
EXPECT_EQ(12,ua.cref());
EXPECT_EQ(12,r);
- uninitialized<const int &> uc;
+ uninitialized<const int&> uc;
uc.construct(ua.ref());
r=uc.apply(A);