diff --git a/.github/workflows/basic.yml b/.github/workflows/basic.yml index e563ce38be1f6aabdb1c7da03ea468a3f1e5291c..f2400fab878870dbe4137a127d63e879c9a90e2f 100644 --- a/.github/workflows/basic.yml +++ b/.github/workflows/basic.yml @@ -161,28 +161,10 @@ jobs: run: mpirun -n 4 -oversubscribe build/bin/unit-mpi - if: ${{ matrix.config.mpi == 'OFF' }} name: Run examples - run: | - build/bin/bench - build/bin/brunel - build/bin/dryrun - build/bin/gap_junctions - build/bin/generators - build/bin/lfp - build/bin/probe-demo v - build/bin/ring - build/bin/single-cell + run: scripts/run_cpp_examples.sh - if: ${{ matrix.config.mpi == 'ON' }} name: Run examples with MPI - run: | - mpirun -n 4 -oversubscribe build/bin/bench - mpirun -n 4 -oversubscribe build/bin/brunel - mpirun -n 4 -oversubscribe build/bin/dryrun - mpirun -n 4 -oversubscribe build/bin/gap_junctions - mpirun -n 4 -oversubscribe build/bin/generators - mpirun -n 4 -oversubscribe build/bin/lfp - mpirun -n 4 -oversubscribe build/bin/probe-demo v - mpirun -n 4 -oversubscribe build/bin/ring - mpirun -n 4 -oversubscribe build/bin/single-cell + run: scripts/run_cpp_examples.sh "mpirun -n 4 -oversubscribe" - name: Run python tests run: | cd build @@ -192,13 +174,4 @@ jobs: name: Run python+MPI tests run: mpirun -n 4 -oversubscribe python python/test/unit_distributed/runner.py -v2 - name: Run Python examples - run: | - python python/example/network_ring.py - python python/example/single_cell_model.py - python python/example/single_cell_recipe.py - python python/example/single_cell_stdp.py - python python/example/brunel.py -n 400 -m 100 -e 20 -p 0.1 -w 1.2 -d 1 -g 0.5 -l 5 -t 100 -s 1 -G 50 -S 123 - python python/example/single_cell_swc.py python/example/single_cell_detailed.swc - python python/example/single_cell_detailed.py python/example/single_cell_detailed.swc - python python/example/single_cell_detailed_recipe.py python/example/single_cell_detailed.swc - python python/example/single_cell_cable.py + run: scripts/run_python_examples.sh diff --git a/.github/workflows/sanitize.yml b/.github/workflows/sanitize.yml index 1b40b7f0c20d9dabe20772c6623edeed3fc7410f..1e7e371a56f9a85dab837985800b4ebcf6a584dd 100644 --- a/.github/workflows/sanitize.yml +++ b/.github/workflows/sanitize.yml @@ -40,13 +40,4 @@ jobs: build/bin/unit --gtest_filter=-*DeathTest build/bin/unit-modcc - name: Run examples - run: | - build/bin/bench - build/bin/brunel - build/bin/dryrun - build/bin/gap_junctions - build/bin/generators - build/bin/lfp - build/bin/probe-demo v - build/bin/ring - build/bin/single-cell + run: scripts/run_cpp_examples.sh diff --git a/scripts/run_cpp_examples.sh b/scripts/run_cpp_examples.sh new file mode 100755 index 0000000000000000000000000000000000000000..d463b29f3b3cf4b02edf7cb0144e765e4b62cc62 --- /dev/null +++ b/scripts/run_cpp_examples.sh @@ -0,0 +1,21 @@ +#!/usr/bin/env bash +# Runs all C++ examples + +set -Eeuo pipefail + +if [[ "$#" -gt 1 ]]; then + echo "usage: run_cpp_examples.sh <prefix, e.g., mpirun -n 4 -oversubscribe>" + exit 1 +fi + +PREFIX=${1:-} + +$PREFIX build/bin/bench +$PREFIX build/bin/brunel +$PREFIX build/bin/dryrun +$PREFIX build/bin/gap_junctions +$PREFIX build/bin/generators +$PREFIX build/bin/lfp +$PREFIX build/bin/probe-demo v +$PREFIX build/bin/ring +$PREFIX build/bin/single-cell diff --git a/scripts/run_python_examples.sh b/scripts/run_python_examples.sh new file mode 100755 index 0000000000000000000000000000000000000000..5eca21dc5f5cdbf98462616bbd88a2b25e121d54 --- /dev/null +++ b/scripts/run_python_examples.sh @@ -0,0 +1,21 @@ +#!/usr/bin/env bash +# Runs all Python examples + +set -Eeuo pipefail + +if [[ "$#" -gt 1 ]]; then + echo "usage: run_python_examples.sh <prefix>" + exit 1 +fi + +PREFIX=${1:-} + +$PREFIX python python/example/network_ring.py +$PREFIX python python/example/single_cell_model.py +$PREFIX python python/example/single_cell_recipe.py +$PREFIX python python/example/single_cell_stdp.py +$PREFIX python python/example/brunel.py -n 400 -m 100 -e 20 -p 0.1 -w 1.2 -d 1 -g 0.5 -l 5 -t 100 -s 1 -G 50 -S 123 +$PREFIX python python/example/single_cell_swc.py python/example/single_cell_detailed.swc +$PREFIX python python/example/single_cell_detailed.py python/example/single_cell_detailed.swc +$PREFIX python python/example/single_cell_detailed_recipe.py python/example/single_cell_detailed.swc +$PREFIX python python/example/single_cell_cable.py