diff --git a/arbor/cable_cell_param.cpp b/arbor/cable_cell_param.cpp index 7f343967b22466abc64bac2485bd97dc7113500a..0868f410e321e90e93665ffbab7732e5f45cf923 100644 --- a/arbor/cable_cell_param.cpp +++ b/arbor/cable_cell_param.cpp @@ -134,9 +134,6 @@ void decor::set_default(defaultable what) { else if constexpr (std::is_same_v<membrane_capacitance, T>) { defaults_.membrane_capacitance = p.value; } - else if constexpr (std::is_same_v<initial_ion_data, T>) { - defaults_.ion_data[p.ion] = p.initial; - } else if constexpr (std::is_same_v<init_int_concentration, T>) { defaults_.ion_data[p.ion].init_int_concentration = p.value; } diff --git a/arbor/include/arbor/cable_cell_param.hpp b/arbor/include/arbor/cable_cell_param.hpp index b98421902f8db7c1dff49b2607ae802c981fb1f0..edd9a0427418d3d3049068d522473559465c7c39 100644 --- a/arbor/include/arbor/cable_cell_param.hpp +++ b/arbor/include/arbor/cable_cell_param.hpp @@ -160,11 +160,6 @@ private: std::unordered_map<std::string, double> param_; }; -struct initial_ion_data { - std::string ion; - cable_cell_ion_data initial; -}; - struct ion_reversal_potential_method { std::string ion; mechanism_desc method; @@ -191,7 +186,6 @@ using defaultable = axial_resistivity, temperature_K, membrane_capacitance, - initial_ion_data, init_int_concentration, init_ext_concentration, init_reversal_potential, diff --git a/python/cells.cpp b/python/cells.cpp index 493409acbe957d65e998446124210124dd4c60fa..2d9589b31a541e12815eb8e3d2dc8a7c9d06e754 100644 --- a/python/cells.cpp +++ b/python/cells.cpp @@ -315,32 +315,6 @@ void register_cells(pybind11::module& m) { .def("__str__", [](const arb::threshold_detector& d){ return util::pprintf("(threshold_detector {})", d.threshold);}); - // arb::cable_cell_ion_data - - pybind11::class_<arb::initial_ion_data> ion_data(m, "ion", - "For setting ion properties (internal and external concentration and reversal potential) on cells and regions."); - ion_data - .def(pybind11::init( - [](const char* name, - optional<double> int_con, - optional<double> ext_con, - optional<double> rev_pot) - { - arb::initial_ion_data x; - x.ion = name; - if (int_con) x.initial.init_int_concentration = *int_con; - if (ext_con) x.initial.init_ext_concentration = *ext_con; - if (rev_pot) x.initial.init_reversal_potential = *rev_pot; - return x; - } - ), - "ion_name"_a, - pybind11::arg_v("int_con", pybind11::none(), "Intial internal concentration [mM]"), - pybind11::arg_v("ext_con", pybind11::none(), "Intial external concentration [mM]"), - pybind11::arg_v("rev_pot", pybind11::none(), "Intial reversal potential [mV]"), - "If concentrations or reversal potential are specified as 'None'," - " cell default or global default value will be used, in that order if set."); - // arb::cable_cell_global_properties pybind11::class_<arb::cable_cell_global_properties> gprop(m, "cable_global_properties");