diff --git a/src/cell.hpp b/src/cell.hpp index fece134947041d705564008e54be61ce93d50f60..98b871cb193ee09a595416128e6342b84fa028b9 100644 --- a/src/cell.hpp +++ b/src/cell.hpp @@ -5,9 +5,9 @@ #include <thread> #include <vector> -#include <segment.hpp> -#include <cell_tree.hpp> -#include <stimulus.hpp> +#include "segment.hpp" +#include "cell_tree.hpp" +#include "stimulus.hpp" namespace nest { namespace mc { diff --git a/src/fvm.hpp b/src/fvm.hpp index f047581ef96bb07819ac43c34673bd45ba0e2426..d4bf2aaa3b139d7e0f51201e8bb522682c4e5fce 100644 --- a/src/fvm.hpp +++ b/src/fvm.hpp @@ -5,16 +5,16 @@ #include <string> #include <vector> -#include <algorithms.hpp> -#include <cell.hpp> -#include <ion.hpp> -#include <math.hpp> -#include <matrix.hpp> -#include <mechanism.hpp> -#include <mechanism_interface.hpp> -#include <util.hpp> -#include <segment.hpp> -#include <stimulus.hpp> +#include "algorithms.hpp" +#include "cell.hpp" +#include "ion.hpp" +#include "math.hpp" +#include "matrix.hpp" +#include "mechanism.hpp" +#include "mechanism_interface.hpp" +#include "util.hpp" +#include "segment.hpp" +#include "stimulus.hpp" #include <Vector.hpp> diff --git a/src/swcio.cpp b/src/swcio.cpp index f96676449d9526154d4f7d0cd3531da62bba715e..792d0fc7bdb3b4898b575dae552d0347efd85e9c 100644 --- a/src/swcio.cpp +++ b/src/swcio.cpp @@ -4,10 +4,10 @@ #include <sstream> #include <unordered_set> -#include <algorithms.hpp> -#include <point.hpp> -#include <swcio.hpp> -#include <util.hpp> +#include "algorithms.hpp" +#include "point.hpp" +#include "swcio.hpp" +#include "util.hpp" namespace nest { namespace mc { diff --git a/src/swcio.hpp b/src/swcio.hpp index a58bbac9aee9a32c03ae9bb33eb9289782a537b2..70f979cda362f503a81965c274a5cdeb23ea5056 100644 --- a/src/swcio.hpp +++ b/src/swcio.hpp @@ -6,8 +6,8 @@ #include <string> #include <vector> -#include <cell.hpp> -#include <point.hpp> +#include "cell.hpp" +#include "point.hpp" namespace nest { namespace mc { diff --git a/tests/test_algorithms.cpp b/tests/test_algorithms.cpp index f69569c9611068250cc3265524cfe64e1e10bd55..7ecfa894ca3760efb5be5db95e2be85b97e759db 100644 --- a/tests/test_algorithms.cpp +++ b/tests/test_algorithms.cpp @@ -1,9 +1,10 @@ +#include <vector> + #include "gtest.h" +#include "util.hpp" -#include <vector> +#include "../src/algorithms.hpp" -#include <algorithms.hpp> -#include <util.hpp> TEST(algorithms, sum) { diff --git a/tests/test_matrix.cpp b/tests/test_matrix.cpp index 07738a6c1b4e90ba23b6f74fb96fedd19346245e..2f2587f44ecce48e4e2222795695b78a8b70705e 100644 --- a/tests/test_matrix.cpp +++ b/tests/test_matrix.cpp @@ -1,10 +1,11 @@ #include <numeric> +#include <vector> #include "gtest.h" -#include <matrix.hpp> -#include <math.hpp> -#include <Vector.hpp> +#include "../src/matrix.hpp" +#include "../src/math.hpp" + TEST(matrix, construct_from_parent_only) { diff --git a/tests/test_mechanisms.cpp b/tests/test_mechanisms.cpp index d61c89d20b40136044dfd7556157b68947d8e56f..aef84890275263ca7ef9570c1017864736a6f331 100644 --- a/tests/test_mechanisms.cpp +++ b/tests/test_mechanisms.cpp @@ -1,7 +1,7 @@ #include "gtest.h" -#include <mechanism_interface.hpp> -#include <matrix.hpp> +#include "../src/mechanism_interface.hpp" +#include "../src/matrix.hpp" TEST(mechanisms, helpers) { nest::mc::mechanisms::setup_mechanism_helpers(); diff --git a/tests/test_parameters.cpp b/tests/test_parameters.cpp index 0dce58b0c5472de6db9d721ad78dece7a9b3de94..8a4b0d200785036d727fda4cae698a7950fbf040 100644 --- a/tests/test_parameters.cpp +++ b/tests/test_parameters.cpp @@ -1,10 +1,9 @@ - #include <fstream> #include "gtest.h" #include "util.hpp" -#include <parameter_list.hpp> +#include "../src/parameter_list.hpp" // test out the parameter infrastructure TEST(parameters, setting) diff --git a/tests/test_swcio.cpp b/tests/test_swcio.cpp index 6968fd432a89842023807c8ed0ffb2ca8140b231..c3fc24d3926c86abd1ed3be760c1c6f5b7316ced 100644 --- a/tests/test_swcio.cpp +++ b/tests/test_swcio.cpp @@ -8,8 +8,8 @@ #include "gtest.h" -#include <cell.hpp> -#include <swcio.hpp> +#include "../src/cell.hpp" +#include "../src/swcio.hpp" // SWC tests void expect_record_equals(const nest::mc::io::swc_record &expected, diff --git a/tests/test_tree.cpp b/tests/test_tree.cpp index 696ef886202590abb5c806e06d6b4b92670bb837..d933705513539b77fc16e4cea0cd2522829beac5 100644 --- a/tests/test_tree.cpp +++ b/tests/test_tree.cpp @@ -2,11 +2,12 @@ #include <fstream> #include <numeric> #include <vector> +#include <json.hpp> #include "gtest.h" -#include <cell_tree.hpp> -#include <json.hpp> +#include "../src/cell_tree.hpp" + using json = nlohmann::json; using range = memory::Range; diff --git a/tests/validate_ball_and_stick.cpp b/tests/validate_ball_and_stick.cpp index 6e8098bd68daa2185b5fc2d374d93304f6f6c2c8..2b85502201b26a903a6f22d02dd9fa68cfd97145 100644 --- a/tests/validate_ball_and_stick.cpp +++ b/tests/validate_ball_and_stick.cpp @@ -1,12 +1,12 @@ #include <fstream> +#include <json.hpp> #include "gtest.h" #include "util.hpp" -#include <cell.hpp> -#include <fvm.hpp> -#include <json.hpp> +#include "../src/cell.hpp" +#include "../src/fvm.hpp" // compares results with those generated by nrn/ball_and_stick.py TEST(ball_and_stick, neuron_baseline) diff --git a/tests/validate_soma.cpp b/tests/validate_soma.cpp index 162242b56d9a201c42f26fa3b542285f03f01ee3..7b5c4c9b138e0f2cfc5a3c1153361f5e842fe96f 100644 --- a/tests/validate_soma.cpp +++ b/tests/validate_soma.cpp @@ -1,12 +1,14 @@ #include <fstream> +#include <json.hpp> + #include "gtest.h" #include "util.hpp" -#include <cell.hpp> -#include <fvm.hpp> +#include "../src/cell.hpp" +#include "../src/fvm.hpp" + -#include <json.hpp> // compares results with those generated by nrn/soma.py // single compartment model with HH channels