From 1a6ac9f127125eabea9f62b437a3eeb9dabb9b8a Mon Sep 17 00:00:00 2001
From: Brent Huisman <brenthuisman@users.noreply.github.com>
Date: Wed, 7 Oct 2020 15:10:00 +0200
Subject: [PATCH] Fix RTD to fail building (#1177)
Remove imported dependencies in the documentation generation.
---
doc/gs_single_cell.rst | 2 +-
doc/scripts/make_images.py | 14 --------------
2 files changed, 1 insertion(+), 15 deletions(-)
diff --git a/doc/gs_single_cell.rst b/doc/gs_single_cell.rst
index 08d34b05..1565dd1a 100644
--- a/doc/gs_single_cell.rst
+++ b/doc/gs_single_cell.rst
@@ -150,7 +150,7 @@ The other measurement we have is that of the potential, which we plot in step **
Arbor stores sampled quantities under :meth:`arbor.single_cell_model.traces<arbor._arbor.
single_cell_model.traces>`. You should be seeing something like this:
-.. figure:: gen-images/single_cell_model_result.svg
+.. figure:: images/single_cell_model_result.svg
:width: 400
:align: center
diff --git a/doc/scripts/make_images.py b/doc/scripts/make_images.py
index 956971a9..0df83945 100644
--- a/doc/scripts/make_images.py
+++ b/doc/scripts/make_images.py
@@ -2,8 +2,6 @@ import copy
import svgwrite
import math
import inputs
-import seaborn
-import pandas
tag_colors = ['white', '#ffc2c2', 'gray', '#c2caff']
@@ -11,16 +9,6 @@ tag_colors = ['white', '#ffc2c2', 'gray', '#c2caff']
# ############################################
#
-def dataframe_line_plot(input_csv, output_svg):
- print('generating:', output_svg)
- dataframe = pandas.read_csv(input_csv,index_col=0)
- axes = dict(zip(['x','y','hue','col','style'],dataframe.columns.values)) # 5D seems enough for now.
- seaborn.relplot(data=dataframe, kind="line", **axes).savefig(output_svg)
-
-#
-# ############################################
-#
-
def translate(x, f, xshift):
return (f*x[0]+xshift, -f*x[1])
@@ -292,8 +280,6 @@ def generate(path=''):
label_image(inputs.label_morph, [inputs.reg_radgt5], path+'/radiusgt_label.svg')
label_image(inputs.label_morph, [inputs.reg_radge5], path+'/radiusge_label.svg')
- # dataframe_line_plot(path+'/../images/single_cell_model_result.csv', path+'/single_cell_model_result.svg')
-
if __name__ == '__main__':
generate('.')
--
GitLab