From f1379a952916f3e21f6129bfd3b55f7effd59d28 Mon Sep 17 00:00:00 2001
From: Maximilian Schmidt <max.schmidt@fz-juelich.de>
Date: Wed, 13 Jun 2018 10:46:46 +0900
Subject: [PATCH] Fix call os Rscript in compute_bold_signal.py
---
figures/Schmidt2018_dyn/compute_bold_signal.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/figures/Schmidt2018_dyn/compute_bold_signal.py b/figures/Schmidt2018_dyn/compute_bold_signal.py
index 9c249e0..2191786 100644
--- a/figures/Schmidt2018_dyn/compute_bold_signal.py
+++ b/figures/Schmidt2018_dyn/compute_bold_signal.py
@@ -33,6 +33,7 @@ fn = os.path.join(load_path,
'synaptic_input_{}.npy'.format(area))
synaptic_input = np.load(fn)
+
def bold_R_parser(fn):
f = open(fn, 'r')
# skip first line
@@ -52,7 +53,7 @@ out_fn = os.path.join(save_path,
np.savetxt(fn, synaptic_input / np.max(synaptic_input))
try:
- subprocess.run(['Rscript', '--vanilla', 'compute_bold_signal.R {} {}'.format(fn, out_fn)])
+ subprocess.run(['Rscript', '--vanilla', 'compute_bold_signal.R', fn, out_fn])
except FileNotFoundError:
raise FileNotFoundError("Executing R failed. Did you install R?")
--
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