From ecc5f9fef84a93fdc1ed319944a85e5be55711c7 Mon Sep 17 00:00:00 2001 From: didihou <didi.hou@rwth-aachen.de> Date: Thu, 14 Sep 2023 18:32:30 +0200 Subject: [PATCH] / --- .../M2E_visualize_time_ave_pop_rates-checkpoint.py | 4 ++-- .../M2E_visualize_interareal_connectivity.py | 6 ++++-- .../MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py | 4 ++-- multi-area-model.ipynb | 10 +++++----- 4 files changed, 13 insertions(+), 11 deletions(-) diff --git a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py index 4a923c3..f677416 100644 --- a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py +++ b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py @@ -77,8 +77,8 @@ def plot_time_averaged_population_rates(M, area_list=None, **keywords): ax.set_yticks(y_index) # ax.set_yticklabels(A.network.structure_reversed['V1']) ax.set_yticklabels(A.network.structure['V1'][::-1]) - ax.set_ylabel('Population', size=18) - ax.set_xlabel('Area index', size=18) + ax.set_ylabel('Population', size=15) + ax.set_xlabel('Area index', size=15) t = FixedLocator([0.01, 0.1, 1., 10., 100.]) plt.colorbar(im, ticks=t) diff --git a/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py b/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py index 0fee358..87ac2e6 100644 --- a/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py +++ b/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py @@ -207,8 +207,10 @@ def visualize_interareal_connectivity(M): # ax.set_yticklabels(area_list[::-1], size=6.) ax.set_yticklabels(area_list[::-1], size=10.) - ax.set_ylabel('Target area') - ax.set_xlabel('Source area') + # ax.set_ylabel('Target area') + # ax.set_xlabel('Source area') + ax.set_ylabel('Target area', fontsize=15) + ax.set_xlabel('Source area', fontsize=15) im = ax.pcolormesh(masked_matrix_full_scale, cmap=cmap, edgecolors='None', norm=LogNorm(vmin=1e-6, vmax=1.)) diff --git a/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py b/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py index 4a923c3..f677416 100644 --- a/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py +++ b/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py @@ -77,8 +77,8 @@ def plot_time_averaged_population_rates(M, area_list=None, **keywords): ax.set_yticks(y_index) # ax.set_yticklabels(A.network.structure_reversed['V1']) ax.set_yticklabels(A.network.structure['V1'][::-1]) - ax.set_ylabel('Population', size=18) - ax.set_xlabel('Area index', size=18) + ax.set_ylabel('Population', size=15) + ax.set_xlabel('Area index', size=15) t = FixedLocator([0.01, 0.1, 1., 10., 100.]) plt.colorbar(im, ticks=t) diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb index d2bcb1c..4e90e04 100644 --- a/multi-area-model.ipynb +++ b/multi-area-model.ipynb @@ -579,10 +579,10 @@ "metadata": {}, "source": [ "Comparable figure in our publications: <br>\n", - "1. Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ\n", + "1. Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ <br>\n", " Multi-scale account of the network structure of macaque visual cortex\n", - " Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) \n", - " Fig. 4 D Area-level connectivity of the model, based on data in a–c, expressed as relative indegrees for each target area" + " Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) <br>\n", + " **Fig. 4 D Area-level connectivity of the model, based on data in a–c, expressed as relative indegrees for each target area**" ] }, { @@ -807,8 +807,8 @@ "Comparable figure in our publications: <br>\n", "1. Schmidt M, Bakker R, Shen K, Bezgin B, Diesmann M & van Albada SJ (2018)\n", " A multi-scale layer-resolved spiking network model of\n", - " resting-state dynamics in macaque cortex. PLOS Computational Biology, 14(9): e1006359. [https://doi.org/10.1371/journal.pcbi.1006359](https://doi.org/10.1371/journal.pcbi.1006359)\n", - " Fig 5. Resting state of the model with χ =1.9" + " resting-state dynamics in macaque cortex. PLOS Computational Biology, 14(9): e1006359. [https://doi.org/10.1371/journal.pcbi.1006359](https://doi.org/10.1371/journal.pcbi.1006359) <br>\n", + " **Fig 5. Resting state of the model with χ =1.9**" ] }, { -- GitLab