diff --git a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py index 4a923c3268079714339f83229a8473cba20ee835..f67741694d4e8bfa638de5657283434201cb6c89 100644 --- a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py +++ b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_time_ave_pop_rates-checkpoint.py @@ -77,8 +77,8 @@ def plot_time_averaged_population_rates(M, area_list=None, **keywords): ax.set_yticks(y_index) # ax.set_yticklabels(A.network.structure_reversed['V1']) ax.set_yticklabels(A.network.structure['V1'][::-1]) - ax.set_ylabel('Population', size=18) - ax.set_xlabel('Area index', size=18) + ax.set_ylabel('Population', size=15) + ax.set_xlabel('Area index', size=15) t = FixedLocator([0.01, 0.1, 1., 10., 100.]) plt.colorbar(im, ticks=t) diff --git a/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py b/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py index 0fee3585775a0770dd9156fc375cc80516401801..87ac2e6d75104003f471b7bf415e8052eddcbd29 100644 --- a/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py +++ b/figures/MAM2EBRAINS/M2E_visualize_interareal_connectivity.py @@ -207,8 +207,10 @@ def visualize_interareal_connectivity(M): # ax.set_yticklabels(area_list[::-1], size=6.) ax.set_yticklabels(area_list[::-1], size=10.) - ax.set_ylabel('Target area') - ax.set_xlabel('Source area') + # ax.set_ylabel('Target area') + # ax.set_xlabel('Source area') + ax.set_ylabel('Target area', fontsize=15) + ax.set_xlabel('Source area', fontsize=15) im = ax.pcolormesh(masked_matrix_full_scale, cmap=cmap, edgecolors='None', norm=LogNorm(vmin=1e-6, vmax=1.)) diff --git a/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py b/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py index 4a923c3268079714339f83229a8473cba20ee835..f67741694d4e8bfa638de5657283434201cb6c89 100644 --- a/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py +++ b/figures/MAM2EBRAINS/M2E_visualize_time_ave_pop_rates.py @@ -77,8 +77,8 @@ def plot_time_averaged_population_rates(M, area_list=None, **keywords): ax.set_yticks(y_index) # ax.set_yticklabels(A.network.structure_reversed['V1']) ax.set_yticklabels(A.network.structure['V1'][::-1]) - ax.set_ylabel('Population', size=18) - ax.set_xlabel('Area index', size=18) + ax.set_ylabel('Population', size=15) + ax.set_xlabel('Area index', size=15) t = FixedLocator([0.01, 0.1, 1., 10., 100.]) plt.colorbar(im, ticks=t) diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb index d2bcb1cd333364e2819b5c57478f89f9ddbef27e..4e90e04b0048a00a46bb2f037234257f45d58295 100644 --- a/multi-area-model.ipynb +++ b/multi-area-model.ipynb @@ -579,10 +579,10 @@ "metadata": {}, "source": [ "Comparable figure in our publications: <br>\n", - "1. Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ\n", + "1. Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ <br>\n", " Multi-scale account of the network structure of macaque visual cortex\n", - " Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) \n", - " Fig. 4 D Area-level connectivity of the model, based on data in a–c, expressed as relative indegrees for each target area" + " Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) <br>\n", + " **Fig. 4 D Area-level connectivity of the model, based on data in a–c, expressed as relative indegrees for each target area**" ] }, { @@ -807,8 +807,8 @@ "Comparable figure in our publications: <br>\n", "1. Schmidt M, Bakker R, Shen K, Bezgin B, Diesmann M & van Albada SJ (2018)\n", " A multi-scale layer-resolved spiking network model of\n", - " resting-state dynamics in macaque cortex. PLOS Computational Biology, 14(9): e1006359. [https://doi.org/10.1371/journal.pcbi.1006359](https://doi.org/10.1371/journal.pcbi.1006359)\n", - " Fig 5. Resting state of the model with χ =1.9" + " resting-state dynamics in macaque cortex. PLOS Computational Biology, 14(9): e1006359. [https://doi.org/10.1371/journal.pcbi.1006359](https://doi.org/10.1371/journal.pcbi.1006359) <br>\n", + " **Fig 5. Resting state of the model with χ =1.9**" ] }, {