From e55373a1592b12836f433b0da932ab3d8cbe197d Mon Sep 17 00:00:00 2001
From: didihou <didi.hou@rwth-aachen.de>
Date: Wed, 13 Sep 2023 12:57:31 +0200
Subject: [PATCH] /
---
.../MAM2EBRAINS_VISUALIZATION-checkpoint.py | 17 +++++++++++------
.../MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py | 13 ++++++++-----
2 files changed, 19 insertions(+), 11 deletions(-)
diff --git a/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py b/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py
index db8902d..2ef9781 100644
--- a/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py
+++ b/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py
@@ -45,15 +45,17 @@ def set_boxplot_props(d):
pl.setp(d['means'], marker='x', color='k',
markerfacecolor='k', markeredgecolor='k', markersize=3.)
-def plot_resting_state(A, label_spikes, data_path):
+def plot_resting_state(A, label_spikes, data_path, sim_params):
+ t_sim = sim_params["t_sim"]
+
"""
Figure layout
"""
nrows = 4
ncols = 4
- # width = 7.0866
- width = 10
+ width = 7.0866
+ # width = 10
panel_wh_ratio = 0.7 * (1. + np.sqrt(5)) / 2. # golden ratio
height = width / panel_wh_ratio * float(nrows) / ncols
@@ -215,8 +217,8 @@ def plot_resting_state(A, label_spikes, data_path):
# t_min = 3000.
# t_max = 3500.
- t_min = 500.
- t_max = 1000.
+ t_min = t_sim - 500
+ t_max = t_sim
icolor = myred
ecolor = myblue
@@ -271,7 +273,10 @@ def plot_resting_state(A, label_spikes, data_path):
ax.set_xlabel('Time (s)', labelpad=-0.1)
ax.set_xticks([t_min, t_min + 250., t_max])
# ax.set_xticklabels([r'$3.$', r'$3.25$', r'$3.5$'])
- ax.set_xticklabels([r'$0.5$', r'$0.75$', r'$1.0$'])
+ l = t_min/1000
+ m = (t_min + t_max)/2000
+ r = t_max/1000
+ ax.set_xticklabels([r'$l$', r'$m$', r'$r$'])
# print("plotting Population rates")
diff --git a/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py b/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py
index 5a5ea90..2ef9781 100644
--- a/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py
+++ b/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py
@@ -54,8 +54,8 @@ def plot_resting_state(A, label_spikes, data_path, sim_params):
nrows = 4
ncols = 4
- # width = 7.0866
- width = 10
+ width = 7.0866
+ # width = 10
panel_wh_ratio = 0.7 * (1. + np.sqrt(5)) / 2. # golden ratio
height = width / panel_wh_ratio * float(nrows) / ncols
@@ -217,8 +217,8 @@ def plot_resting_state(A, label_spikes, data_path, sim_params):
# t_min = 3000.
# t_max = 3500.
- t_min = 500.
- t_max = 1000.
+ t_min = t_sim - 500
+ t_max = t_sim
icolor = myred
ecolor = myblue
@@ -273,7 +273,10 @@ def plot_resting_state(A, label_spikes, data_path, sim_params):
ax.set_xlabel('Time (s)', labelpad=-0.1)
ax.set_xticks([t_min, t_min + 250., t_max])
# ax.set_xticklabels([r'$3.$', r'$3.25$', r'$3.5$'])
- ax.set_xticklabels([r'$0.5$', r'$0.75$', r'$1.0$'])
+ l = t_min/1000
+ m = (t_min + t_max)/2000
+ r = t_max/1000
+ ax.set_xticklabels([r'$l$', r'$m$', r'$r$'])
# print("plotting Population rates")
--
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