diff --git a/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py b/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py index db8902d1c97efe8104e7dee0c028ec92461a6e5c..2ef9781aeaaf6ccd943565e803e127682c1b72e8 100644 --- a/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py +++ b/figures/MAM2EBRAINS/.ipynb_checkpoints/MAM2EBRAINS_VISUALIZATION-checkpoint.py @@ -45,15 +45,17 @@ def set_boxplot_props(d): pl.setp(d['means'], marker='x', color='k', markerfacecolor='k', markeredgecolor='k', markersize=3.) -def plot_resting_state(A, label_spikes, data_path): +def plot_resting_state(A, label_spikes, data_path, sim_params): + t_sim = sim_params["t_sim"] + """ Figure layout """ nrows = 4 ncols = 4 - # width = 7.0866 - width = 10 + width = 7.0866 + # width = 10 panel_wh_ratio = 0.7 * (1. + np.sqrt(5)) / 2. # golden ratio height = width / panel_wh_ratio * float(nrows) / ncols @@ -215,8 +217,8 @@ def plot_resting_state(A, label_spikes, data_path): # t_min = 3000. # t_max = 3500. - t_min = 500. - t_max = 1000. + t_min = t_sim - 500 + t_max = t_sim icolor = myred ecolor = myblue @@ -271,7 +273,10 @@ def plot_resting_state(A, label_spikes, data_path): ax.set_xlabel('Time (s)', labelpad=-0.1) ax.set_xticks([t_min, t_min + 250., t_max]) # ax.set_xticklabels([r'$3.$', r'$3.25$', r'$3.5$']) - ax.set_xticklabels([r'$0.5$', r'$0.75$', r'$1.0$']) + l = t_min/1000 + m = (t_min + t_max)/2000 + r = t_max/1000 + ax.set_xticklabels([r'$l$', r'$m$', r'$r$']) # print("plotting Population rates") diff --git a/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py b/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py index 5a5ea902354512f231fb2da619144869466fa571..2ef9781aeaaf6ccd943565e803e127682c1b72e8 100644 --- a/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py +++ b/figures/MAM2EBRAINS/MAM2EBRAINS_VISUALIZATION.py @@ -54,8 +54,8 @@ def plot_resting_state(A, label_spikes, data_path, sim_params): nrows = 4 ncols = 4 - # width = 7.0866 - width = 10 + width = 7.0866 + # width = 10 panel_wh_ratio = 0.7 * (1. + np.sqrt(5)) / 2. # golden ratio height = width / panel_wh_ratio * float(nrows) / ncols @@ -217,8 +217,8 @@ def plot_resting_state(A, label_spikes, data_path, sim_params): # t_min = 3000. # t_max = 3500. - t_min = 500. - t_max = 1000. + t_min = t_sim - 500 + t_max = t_sim icolor = myred ecolor = myblue @@ -273,7 +273,10 @@ def plot_resting_state(A, label_spikes, data_path, sim_params): ax.set_xlabel('Time (s)', labelpad=-0.1) ax.set_xticks([t_min, t_min + 250., t_max]) # ax.set_xticklabels([r'$3.$', r'$3.25$', r'$3.5$']) - ax.set_xticklabels([r'$0.5$', r'$0.75$', r'$1.0$']) + l = t_min/1000 + m = (t_min + t_max)/2000 + r = t_max/1000 + ax.set_xticklabels([r'$l$', r'$m$', r'$r$']) # print("plotting Population rates")