From da4089afc7bde57371e8b1621a295bbcc6666a95 Mon Sep 17 00:00:00 2001 From: Alexander van Meegen <a.van.meegen@fz-juelich.de> Date: Thu, 3 Dec 2020 11:37:43 +0100 Subject: [PATCH] Add pytest to requirements --- README.md | 4 ++-- requirements.txt | 1 + 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 63d8edb..98ab245 100644 --- a/README.md +++ b/README.md @@ -87,7 +87,7 @@ basic analysis and plotting. ## Analysis and figure scripts for [1-3] The `figures` folder contains subfolders with all scripts necessary to produce -the figures from [1-3]. If Snakemake (Köster J & Rahmann S, Bioinformatics (2012) 28(19): 2520-2522) +the figures from [1-3]. If Snakemake (Köster J & Rahmann S, Bioinformatics (2012) 28(19): 2520-2522) is installed, the figures can be produced by executing `snakemake` in the respective folder, e.g.: @@ -203,7 +203,7 @@ conveniently run by executing `pytest` in the `tests/` folder: ## Requirements Python 3, python\_dicthash ([https://github.com/INM-6/python-dicthash](https://github.com/INM-6/python-dicthash)), correlation\_toolbox ([https://github.com/INM-6/correlation-toolbox](https://github.com/INM-6/correlation-toolbox)), -pandas, numpy, nested_dict, matplotlib (2.1.2), scipy, NEST 2.14.0 +pandas, numpy, nested_dict, matplotlib (2.1.2), scipy, pytest, NEST 2.14.0 Optional: seaborn, Sumatra diff --git a/requirements.txt b/requirements.txt index 334dade..8e4d8fb 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,5 +3,6 @@ numpy matplotlib pandas scipy +pytest nested_dict dicthash -- GitLab