diff --git a/README.md b/README.md index 63d8edb5863da2dda858d8798e654a3e9f440ba0..98ab245b5a0575fc74d30ac7c7d6b8ed23a57809 100644 --- a/README.md +++ b/README.md @@ -87,7 +87,7 @@ basic analysis and plotting. ## Analysis and figure scripts for [1-3] The `figures` folder contains subfolders with all scripts necessary to produce -the figures from [1-3]. If Snakemake (Köster J & Rahmann S, Bioinformatics (2012) 28(19): 2520-2522) +the figures from [1-3]. If Snakemake (Köster J & Rahmann S, Bioinformatics (2012) 28(19): 2520-2522) is installed, the figures can be produced by executing `snakemake` in the respective folder, e.g.: @@ -203,7 +203,7 @@ conveniently run by executing `pytest` in the `tests/` folder: ## Requirements Python 3, python\_dicthash ([https://github.com/INM-6/python-dicthash](https://github.com/INM-6/python-dicthash)), correlation\_toolbox ([https://github.com/INM-6/correlation-toolbox](https://github.com/INM-6/correlation-toolbox)), -pandas, numpy, nested_dict, matplotlib (2.1.2), scipy, NEST 2.14.0 +pandas, numpy, nested_dict, matplotlib (2.1.2), scipy, pytest, NEST 2.14.0 Optional: seaborn, Sumatra diff --git a/requirements.txt b/requirements.txt index 334dadee1be7c79946682bab225daab7af9f1f8a..8e4d8fb814917e5c4f3877817701810bcb215559 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,5 +3,6 @@ numpy matplotlib pandas scipy +pytest nested_dict dicthash