From d2e21527a8ab333ad209dee5a1e2ecf6e72b0176 Mon Sep 17 00:00:00 2001
From: shimoura <renanshimoura@gmail.com>
Date: Thu, 20 Mar 2025 14:22:45 +0100
Subject: [PATCH] adjust params description numbering in multi-area-model
tutorial
---
multi-area-model.ipynb | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb
index 3e874ca..ec10619 100644
--- a/multi-area-model.ipynb
+++ b/multi-area-model.ipynb
@@ -197,11 +197,11 @@
"```\n",
"The value assigned to `areas_simulated` can be any sublist of complete_area_list.\n",
"\n",
- "1. `replace_non_simulated_areas` defines how non-simulated areas will be replaced. <br> When all areas are included, it is set as `None` by default. <br> Other options are: `'hom_poisson_stat'`, `'het_poisson_stat'`, and `'het_current_nonstat'`.<br> `'hom_poisson_stat'` replaces the non-simulated areas by Poisson sources with the same global rate `rate_ext`. The `'het_poisson_stat'` and `'het_current_nonstat'` options use the loaded specific rates from `'replace_cc_input_source'`, which contains the area-specific firing rates of our full-scale simulation results. The difference is that `'het_poisson_stat'` replaces the non-simulated areas by Poisson spike trains and `'het_current_nonstat'` replaces them with a time-varying current input.\n",
+ "4. `replace_non_simulated_areas` defines how non-simulated areas will be replaced. <br> When all areas are included, it is set as `None` by default. <br> Other options are: `'hom_poisson_stat'`, `'het_poisson_stat'`, and `'het_current_nonstat'`.<br> `'hom_poisson_stat'` replaces the non-simulated areas by Poisson sources with the same global rate `rate_ext`. The `'het_poisson_stat'` and `'het_current_nonstat'` options use the loaded specific rates from `'replace_cc_input_source'`, which contains the area-specific firing rates of our full-scale simulation results. The difference is that `'het_poisson_stat'` replaces the non-simulated areas by Poisson spike trains and `'het_current_nonstat'` replaces them with a time-varying current input.\n",
"\n",
- "2. `g` defines the relative inhibitory synaptic strength (in relative units to the excitatory synaptic strength). By default: `-11.0`, as used in the full-scale network. `g = -1.0` means equal excitatory and inhibitory strengths, and `g < -1.0` results in stronger inhibition than excitation.\n",
+ "5. `g` defines the relative inhibitory synaptic strength (in relative units to the excitatory synaptic strength). By default: `-11.0`, as used in the full-scale network. `g = -1.0` means equal excitatory and inhibitory strengths, and `g < -1.0` results in stronger inhibition than excitation.\n",
"\n",
- "3. `rate_ext` defines the rate of the Poissonian spike generator (in spikes/s), by default: `10.0`. It also serves as one of the input parameters of the model. When a larger value is assigned to `rate_ext`, the excitatory background noise is increased. Note that the external Poisson indegree onto 5E and 6E is increased by a factor of 1.125 and 1.41666667 respectively, and the external Poisson indegree onto 23E and 5E in area TH is increased by a factor of 1.2."
+ "6. `rate_ext` defines the rate of the Poissonian spike generator (in spikes/s), by default: `10.0`. It also serves as one of the input parameters of the model. When a larger value is assigned to `rate_ext`, the excitatory background noise is increased. Note that the external Poisson indegree onto 5E and 6E is increased by a factor of 1.125 and 1.41666667 respectively, and the external Poisson indegree onto 23E and 5E in area TH is increased by a factor of 1.2."
]
},
{
--
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