From c3a7c534f94a0e658e0a15734ff030ed017c79af Mon Sep 17 00:00:00 2001
From: Maximilian Schmidt <max.schmidt@fz-juelich.de>
Date: Tue, 5 Jun 2018 13:13:32 +0900
Subject: [PATCH] Switch default in snakemake file to load original data, fix
typo, add exception for non-define data path
---
figures/Schmidt2018_dyn/Snakefile | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/figures/Schmidt2018_dyn/Snakefile b/figures/Schmidt2018_dyn/Snakefile
index 531cc6e..dd1b187 100644
--- a/figures/Schmidt2018_dyn/Snakefile
+++ b/figures/Schmidt2018_dyn/Snakefile
@@ -6,7 +6,7 @@ area_list = ['V1', 'V2', 'VP', 'V3', 'V3A', 'MT', 'V4t', 'V4', 'VOT', 'MSTd',
'STPa', '46', 'AITd', 'TH']
population_list = ['23E', '23I', '4E', '4I', '5E', '5I', '6E', '6I']
-LOAD_ORIGINAL_DATA = False
+LOAD_ORIGINAL_DATA = True
ORIGINAL_SIM_LABELS = {'all': ['533d73357fbe99f6178029e6054b571b485f40f6',
'0adda4a542c3d5d43aebf7c30d876b6c5fd1d63e',
@@ -55,13 +55,17 @@ ORIGINAL_SIM_LABELS = {'all': ['533d73357fbe99f6178029e6054b571b485f40f6',
if LOAD_ORIGINAL_DATA:
DATA_DIR = original_data_path
- SIM_LABELS = ORIGINAL_SIM_LABELS_LABELS
+ SIM_LABELS = ORIGINAL_SIM_LABELS
else:
from network_simulations import create_label_dict
from config import data_path
DATA_DIR = data_path
SIM_LABELS = create_label_dict()
+if DATA_DIR is None:
+ raise TypeError("The path to the data files is None. "
+ "Please define the data path.")
+
rule all:
input:
'Fig1_model_overview.eps',
--
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