From b47c9d86ea998e459f5ec3844902c9567f63bfcc Mon Sep 17 00:00:00 2001
From: didihou <didi.hou@rwth-aachen.de>
Date: Fri, 8 Sep 2023 14:36:02 +0200
Subject: [PATCH] /
---
.ipynb_checkpoints/multi-area-model-checkpoint.ipynb | 6 +++---
multi-area-model.ipynb | 6 +++---
2 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb b/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
index a855697..821363d 100644
--- a/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
+++ b/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
@@ -1150,7 +1150,7 @@
},
{
"cell_type": "code",
- "execution_count": 30,
+ "execution_count": 34,
"id": "b7fd1f63-5927-4fb0-82f5-e8b0c173bd12",
"metadata": {},
"outputs": [],
@@ -1531,7 +1531,7 @@
},
{
"cell_type": "code",
- "execution_count": 31,
+ "execution_count": 35,
"id": "ae19bcc3",
"metadata": {
"tags": []
@@ -1544,7 +1544,7 @@
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)",
- "Input \u001b[0;32mIn [31]\u001b[0m, in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mMAM2EBRAINS\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m \u001b[43mplot_resting_state\u001b[49m\u001b[43m(\u001b[49m\u001b[43mA\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel_spikes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel\u001b[49m\u001b[43m)\u001b[49m\n",
+ "Input \u001b[0;32mIn [35]\u001b[0m, in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mMAM2EBRAINS\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m \u001b[43mplot_resting_state\u001b[49m\u001b[43m(\u001b[49m\u001b[43mA\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel_spikes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[0;32m~/MAM2EBRAINS/./figures/MAM2EBRAINS.py:90\u001b[0m, in \u001b[0;36mplot_resting_state\u001b[0;34m(A, label_spikes, label)\u001b[0m\n\u001b[1;32m 88\u001b[0m gs1 \u001b[38;5;241m=\u001b[39m gridspec\u001b[38;5;241m.\u001b[39mGridSpec(\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m3\u001b[39m)\n\u001b[1;32m 89\u001b[0m gs1\u001b[38;5;241m.\u001b[39mupdate(left\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.06\u001b[39m, right\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.72\u001b[39m, top\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.95\u001b[39m, wspace\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.4\u001b[39m, bottom\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.35\u001b[39m)\n\u001b[0;32m---> 90\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mA\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(\u001b[43mgs1\u001b[49m\u001b[43m[\u001b[49m\u001b[43m:\u001b[49m\u001b[38;5;241;43m-\u001b[39;49m\u001b[38;5;241;43m1\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43m:\u001b[49m\u001b[38;5;241;43m1\u001b[39;49m\u001b[43m]\u001b[49m)\n\u001b[1;32m 91\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mB\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(gs1[:\u001b[38;5;241m-\u001b[39m\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m1\u001b[39m:\u001b[38;5;241m2\u001b[39m])\n\u001b[1;32m 92\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mC\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(gs1[:\u001b[38;5;241m-\u001b[39m\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m2\u001b[39m:])\n",
"File \u001b[0;32m/srv/main-spack-instance-2302/spack/var/spack/environments/ebrains-23-02/.spack-env/view/lib/python3.8/site-packages/matplotlib/gridspec.py:257\u001b[0m, in \u001b[0;36mGridSpecBase.__getitem__\u001b[0;34m(self, key)\u001b[0m\n\u001b[1;32m 254\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m err:\n\u001b[1;32m 255\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mUnrecognized subplot spec\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01merr\u001b[39;00m\n\u001b[1;32m 256\u001b[0m num1, num2 \u001b[38;5;241m=\u001b[39m np\u001b[38;5;241m.\u001b[39mravel_multi_index(\n\u001b[0;32m--> 257\u001b[0m [\u001b[43m_normalize\u001b[49m\u001b[43m(\u001b[49m\u001b[43mk1\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mnrows\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m0\u001b[39;49m\u001b[43m)\u001b[49m, _normalize(k2, ncols, \u001b[38;5;241m1\u001b[39m)],\n\u001b[1;32m 258\u001b[0m (nrows, ncols))\n\u001b[1;32m 259\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m: \u001b[38;5;66;03m# Single key\u001b[39;00m\n\u001b[1;32m 260\u001b[0m num1, num2 \u001b[38;5;241m=\u001b[39m _normalize(key, nrows \u001b[38;5;241m*\u001b[39m ncols, \u001b[38;5;28;01mNone\u001b[39;00m)\n",
"File \u001b[0;32m/srv/main-spack-instance-2302/spack/var/spack/environments/ebrains-23-02/.spack-env/view/lib/python3.8/site-packages/matplotlib/gridspec.py:237\u001b[0m, in \u001b[0;36mGridSpecBase.__getitem__.<locals>._normalize\u001b[0;34m(key, size, axis)\u001b[0m\n\u001b[1;32m 235\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m stop \u001b[38;5;241m>\u001b[39m start:\n\u001b[1;32m 236\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m start, stop \u001b[38;5;241m-\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[0;32m--> 237\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mIndexError\u001b[39;00m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mGridSpec slice would result in no space \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 238\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mallocated for subplot\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 239\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 240\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m key \u001b[38;5;241m<\u001b[39m \u001b[38;5;241m0\u001b[39m:\n",
diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb
index a855697..821363d 100644
--- a/multi-area-model.ipynb
+++ b/multi-area-model.ipynb
@@ -1150,7 +1150,7 @@
},
{
"cell_type": "code",
- "execution_count": 30,
+ "execution_count": 34,
"id": "b7fd1f63-5927-4fb0-82f5-e8b0c173bd12",
"metadata": {},
"outputs": [],
@@ -1531,7 +1531,7 @@
},
{
"cell_type": "code",
- "execution_count": 31,
+ "execution_count": 35,
"id": "ae19bcc3",
"metadata": {
"tags": []
@@ -1544,7 +1544,7 @@
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mIndexError\u001b[0m Traceback (most recent call last)",
- "Input \u001b[0;32mIn [31]\u001b[0m, in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mMAM2EBRAINS\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m \u001b[43mplot_resting_state\u001b[49m\u001b[43m(\u001b[49m\u001b[43mA\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel_spikes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel\u001b[49m\u001b[43m)\u001b[49m\n",
+ "Input \u001b[0;32mIn [35]\u001b[0m, in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mMAM2EBRAINS\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m \u001b[43mplot_resting_state\u001b[49m\u001b[43m(\u001b[49m\u001b[43mA\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel_spikes\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mlabel\u001b[49m\u001b[43m)\u001b[49m\n",
"File \u001b[0;32m~/MAM2EBRAINS/./figures/MAM2EBRAINS.py:90\u001b[0m, in \u001b[0;36mplot_resting_state\u001b[0;34m(A, label_spikes, label)\u001b[0m\n\u001b[1;32m 88\u001b[0m gs1 \u001b[38;5;241m=\u001b[39m gridspec\u001b[38;5;241m.\u001b[39mGridSpec(\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m3\u001b[39m)\n\u001b[1;32m 89\u001b[0m gs1\u001b[38;5;241m.\u001b[39mupdate(left\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.06\u001b[39m, right\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.72\u001b[39m, top\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.95\u001b[39m, wspace\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.4\u001b[39m, bottom\u001b[38;5;241m=\u001b[39m\u001b[38;5;241m0.35\u001b[39m)\n\u001b[0;32m---> 90\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mA\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(\u001b[43mgs1\u001b[49m\u001b[43m[\u001b[49m\u001b[43m:\u001b[49m\u001b[38;5;241;43m-\u001b[39;49m\u001b[38;5;241;43m1\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43m:\u001b[49m\u001b[38;5;241;43m1\u001b[39;49m\u001b[43m]\u001b[49m)\n\u001b[1;32m 91\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mB\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(gs1[:\u001b[38;5;241m-\u001b[39m\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m1\u001b[39m:\u001b[38;5;241m2\u001b[39m])\n\u001b[1;32m 92\u001b[0m axes[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mC\u001b[39m\u001b[38;5;124m'\u001b[39m] \u001b[38;5;241m=\u001b[39m pl\u001b[38;5;241m.\u001b[39msubplot(gs1[:\u001b[38;5;241m-\u001b[39m\u001b[38;5;241m1\u001b[39m, \u001b[38;5;241m2\u001b[39m:])\n",
"File \u001b[0;32m/srv/main-spack-instance-2302/spack/var/spack/environments/ebrains-23-02/.spack-env/view/lib/python3.8/site-packages/matplotlib/gridspec.py:257\u001b[0m, in \u001b[0;36mGridSpecBase.__getitem__\u001b[0;34m(self, key)\u001b[0m\n\u001b[1;32m 254\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m err:\n\u001b[1;32m 255\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mUnrecognized subplot spec\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01merr\u001b[39;00m\n\u001b[1;32m 256\u001b[0m num1, num2 \u001b[38;5;241m=\u001b[39m np\u001b[38;5;241m.\u001b[39mravel_multi_index(\n\u001b[0;32m--> 257\u001b[0m [\u001b[43m_normalize\u001b[49m\u001b[43m(\u001b[49m\u001b[43mk1\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mnrows\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m0\u001b[39;49m\u001b[43m)\u001b[49m, _normalize(k2, ncols, \u001b[38;5;241m1\u001b[39m)],\n\u001b[1;32m 258\u001b[0m (nrows, ncols))\n\u001b[1;32m 259\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m: \u001b[38;5;66;03m# Single key\u001b[39;00m\n\u001b[1;32m 260\u001b[0m num1, num2 \u001b[38;5;241m=\u001b[39m _normalize(key, nrows \u001b[38;5;241m*\u001b[39m ncols, \u001b[38;5;28;01mNone\u001b[39;00m)\n",
"File \u001b[0;32m/srv/main-spack-instance-2302/spack/var/spack/environments/ebrains-23-02/.spack-env/view/lib/python3.8/site-packages/matplotlib/gridspec.py:237\u001b[0m, in \u001b[0;36mGridSpecBase.__getitem__.<locals>._normalize\u001b[0;34m(key, size, axis)\u001b[0m\n\u001b[1;32m 235\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m stop \u001b[38;5;241m>\u001b[39m start:\n\u001b[1;32m 236\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m start, stop \u001b[38;5;241m-\u001b[39m \u001b[38;5;241m1\u001b[39m\n\u001b[0;32m--> 237\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mIndexError\u001b[39;00m(\u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mGridSpec slice would result in no space \u001b[39m\u001b[38;5;124m\"\u001b[39m\n\u001b[1;32m 238\u001b[0m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mallocated for subplot\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[1;32m 239\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m 240\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m key \u001b[38;5;241m<\u001b[39m \u001b[38;5;241m0\u001b[39m:\n",
--
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