diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml new file mode 100644 index 0000000000000000000000000000000000000000..633ad20875755e2a13645ce6e85436e762256dc7 --- /dev/null +++ b/.gitlab-ci.yml @@ -0,0 +1,37 @@ +# Specify stages in this CI workflow +stages: + - build + - test + - deploy + +# List variables and they can be called by the variable names +# variables: + # GITLAB_BUILD_ENV_DOCKER_IMAGE: docker-registry.ebrains.eu/tc/ebrains-spack-build-env/gitlab_runners_nfs:gitlab_runners_nfs_23.06 + # SYSTEMNAME: ebrainslab + +run_notebooks: + stage: test + tags: + # Add tags for runner to select runners that meet the requirement + - docker-runner + + before_script: + # - cat /mnt/ebrains_env/ebrains-23.09/bin/load_env.sh + - . /mnt/ebrains_env/ebrains-23.09/bin/load_env.sh + + + script: + - echo "Starting testing..." + # List all kernels + # - jupyter kernelspec list + - echo "Testing multi-area-model.ipynb..." + # Replace all ebrains-23.09 with python3 as the kernel ebrains-23.09 is now actually named as python3 + - sed -i -e "s/ebrains-23.09/python3/" multi-area-model.ipynb + # Convert jupyter notebook to python file and execute it + - jupyter nbconvert --to notebook --execute ./multi-area-model.ipynb + - echo "Testing M2E_statistical_test.ipynb..." + # Replace all ebrains-23.09 with python3 as the kernel ebrains-23.09 is now actually named as python3 + - sed -i -e "s/ebrains-23.09/python3/" M2E_statistical_test.ipynb + # Convert jupyter notebook to python file and execute it + - jupyter nbconvert --to notebook --execute ./M2E_statistical_test.ipynb + - echo "Testing are finished and passed!"