diff --git a/figures/MAM2EBRAINS/M2E_compute_corrcoeff.py b/figures/MAM2EBRAINS/M2E_compute_corrcoeff.py index 37826a7a24a3c2756a84a016681a37fd36648bd3..1b486296c04d90927b025043cbc08c16185da0c2 100644 --- a/figures/MAM2EBRAINS/M2E_compute_corrcoeff.py +++ b/figures/MAM2EBRAINS/M2E_compute_corrcoeff.py @@ -32,11 +32,8 @@ def compute_corrcoeff(M, data_path, label): resolution = 1. cc_dict = {} - for area in areas_simulated: cc_dict[area] = {} - LvR_list = [] - N = [] for pop in M.structure[area]: fp = '-'.join((label, 'spikes', # assumes that the default label for spike files was used diff --git a/figures/MAM2EBRAINS/M2E_compute_pop_LvR.py b/figures/MAM2EBRAINS/M2E_compute_pop_LvR.py index bd6ca730ff581c80b626245eeaae1059c59eadb1..0cb91a6e4e5fcc16416f08546415d851985060ed 100644 --- a/figures/MAM2EBRAINS/M2E_compute_pop_LvR.py +++ b/figures/MAM2EBRAINS/M2E_compute_pop_LvR.py @@ -32,8 +32,6 @@ def compute_pop_LvR(M, data_path, label): for area in areas_simulated: pop_LvR_dict[area] = {} - LvR_list = [] - N = [] for pop in M.structure[area]: fp = '-'.join((label, 'spikes', # Assumes that the default label for spike files was used diff --git a/figures/MAM2EBRAINS/M2E_compute_rate_time_series.py b/figures/MAM2EBRAINS/M2E_compute_rate_time_series.py index ff594137c775ea7f036891bf4c9bbf56e6930bad..ce83fd1b9dc46edfe01d732c88b3f93d10dae32d 100644 --- a/figures/MAM2EBRAINS/M2E_compute_rate_time_series.py +++ b/figures/MAM2EBRAINS/M2E_compute_rate_time_series.py @@ -52,7 +52,7 @@ def compute_rate_time_series(M, data_path, label, area, method): N_list = [] for pop in M.structure[area]: fp = '-'.join((label, - 'spikes', # assumes that the default label for spike files was used + 'spikes', # Assumes that the default label for spike files was used area, pop)) fn = '{}/{}.npy'.format(load_path, fp) diff --git a/figures/MAM2EBRAINS/M2E_firing_rate.py b/figures/MAM2EBRAINS/M2E_firing_rate.py index a59a332d131adf772e95a3bff02f010282e61d80..c89214eab201aaccd8a6e35641db117de711d2be 100644 --- a/figures/MAM2EBRAINS/M2E_firing_rate.py +++ b/figures/MAM2EBRAINS/M2E_firing_rate.py @@ -73,7 +73,6 @@ def plot_firing_rate_over_areas(M, data_path): t_min = 500. t_max = M.simulation.params['t_sim'] - time = np.arange(t_min, t_max) matrix = [] for area in area_list: binned_spikes = rate_time_series[area][500:600] diff --git a/figures/MAM2EBRAINS/M2E_visualize_fc.py b/figures/MAM2EBRAINS/M2E_visualize_fc.py index ca9b60c43626b5185554d28c03ab873f2e159b0c..749144ed1a5b08610f9c30d27dd481017b9a26fa 100644 --- a/figures/MAM2EBRAINS/M2E_visualize_fc.py +++ b/figures/MAM2EBRAINS/M2E_visualize_fc.py @@ -90,7 +90,6 @@ def visualize_fc(M, data_path): Returns: None """ - area_list = M.simulation.params["areas_simulated"] label = M.simulation.label # Compute functional connectivity