From 441990411dde009680f63a7377246311ae5896cb Mon Sep 17 00:00:00 2001
From: didihou <didi.hou@rwth-aachen.de>
Date: Thu, 14 Sep 2023 02:01:12 +0200
Subject: [PATCH] /
---
.../multi-area-model-checkpoint.ipynb | 43 ++++++++++++++-----
multi-area-model.ipynb | 43 ++++++++++++++-----
2 files changed, 64 insertions(+), 22 deletions(-)
diff --git a/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb b/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
index 2476922..77cddd4 100644
--- a/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
+++ b/.ipynb_checkpoints/multi-area-model-checkpoint.ipynb
@@ -465,7 +465,7 @@
"id": "bae85d86-157c-47a2-9826-860b410a440e",
"metadata": {},
"source": [
- "Based on: <br>\n",
+ "Full-scale interareal connectivity is from: <br>\n",
"Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ <br>\n",
"Multi-scale account of the network structure of macaque visual cortex <br>\n",
"Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) <br> \n",
@@ -570,21 +570,21 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 18,
"id": "ae19bcc3",
"metadata": {
"tags": []
},
"outputs": [
{
- "ename": "NameError",
- "evalue": "name 'A' is not defined",
+ "ename": "TypeError",
+ "evalue": "plot_resting_state() missing 1 required positional argument: 'data_path'",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
- "Cell \u001b[0;32mIn [16], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m plot_resting_state(M, A, label_spikes, data_path)\n",
- "\u001b[0;31mNameError\u001b[0m: name 'A' is not defined"
+ "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn [18], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m plot_resting_state(M, data_path)\n",
+ "\u001b[0;31mTypeError\u001b[0m: plot_resting_state() missing 1 required positional argument: 'data_path'"
]
}
],
@@ -606,10 +606,22 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 19,
"id": "721d1f03-df25-468d-8075-a807025a9c58",
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "ename": "NameError",
+ "evalue": "name 'A' is not defined",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn [19], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;66;03m# %%capture captured\u001b[39;00m\n\u001b[0;32m----> 2\u001b[0m A\u001b[38;5;241m.\u001b[39mshow_rates()\n",
+ "\u001b[0;31mNameError\u001b[0m: name 'A' is not defined"
+ ]
+ }
+ ],
"source": [
"# %%capture captured\n",
"A.show_rates()"
@@ -617,10 +629,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 20,
"id": "5b40db5d-51b2-4d16-b36b-9f1995452b05",
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "ename": "SyntaxError",
+ "evalue": "invalid syntax (2792692880.py, line 1)",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;36m Cell \u001b[0;32mIn [20], line 1\u001b[0;36m\u001b[0m\n\u001b[0;31m |Index|0|1|2|3|4|5|6|7|\u001b[0m\n\u001b[0m ^\u001b[0m\n\u001b[0;31mSyntaxError\u001b[0m\u001b[0;31m:\u001b[0m invalid syntax\n"
+ ]
+ }
+ ],
"source": [
"|Index|0|1|2|3|4|5|6|7|\n",
"|:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|\n",
diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb
index 2476922..77cddd4 100644
--- a/multi-area-model.ipynb
+++ b/multi-area-model.ipynb
@@ -465,7 +465,7 @@
"id": "bae85d86-157c-47a2-9826-860b410a440e",
"metadata": {},
"source": [
- "Based on: <br>\n",
+ "Full-scale interareal connectivity is from: <br>\n",
"Schmidt M, Bakker R, Hilgetag CC, Diesmann M & van Albada SJ <br>\n",
"Multi-scale account of the network structure of macaque visual cortex <br>\n",
"Brain Structure and Function (2018), 223: 1409 [https://doi.org/10.1007/s00429-017-1554-4](https://doi.org/10.1007/s00429-017-1554-4) <br> \n",
@@ -570,21 +570,21 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 18,
"id": "ae19bcc3",
"metadata": {
"tags": []
},
"outputs": [
{
- "ename": "NameError",
- "evalue": "name 'A' is not defined",
+ "ename": "TypeError",
+ "evalue": "plot_resting_state() missing 1 required positional argument: 'data_path'",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
- "Cell \u001b[0;32mIn [16], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m plot_resting_state(M, A, label_spikes, data_path)\n",
- "\u001b[0;31mNameError\u001b[0m: name 'A' is not defined"
+ "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn [18], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[0;32m----> 2\u001b[0m plot_resting_state(M, data_path)\n",
+ "\u001b[0;31mTypeError\u001b[0m: plot_resting_state() missing 1 required positional argument: 'data_path'"
]
}
],
@@ -606,10 +606,22 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 19,
"id": "721d1f03-df25-468d-8075-a807025a9c58",
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "ename": "NameError",
+ "evalue": "name 'A' is not defined",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+ "\u001b[0;31mNameError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn [19], line 2\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[38;5;66;03m# %%capture captured\u001b[39;00m\n\u001b[0;32m----> 2\u001b[0m A\u001b[38;5;241m.\u001b[39mshow_rates()\n",
+ "\u001b[0;31mNameError\u001b[0m: name 'A' is not defined"
+ ]
+ }
+ ],
"source": [
"# %%capture captured\n",
"A.show_rates()"
@@ -617,10 +629,19 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 20,
"id": "5b40db5d-51b2-4d16-b36b-9f1995452b05",
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "ename": "SyntaxError",
+ "evalue": "invalid syntax (2792692880.py, line 1)",
+ "output_type": "error",
+ "traceback": [
+ "\u001b[0;36m Cell \u001b[0;32mIn [20], line 1\u001b[0;36m\u001b[0m\n\u001b[0;31m |Index|0|1|2|3|4|5|6|7|\u001b[0m\n\u001b[0m ^\u001b[0m\n\u001b[0;31mSyntaxError\u001b[0m\u001b[0;31m:\u001b[0m invalid syntax\n"
+ ]
+ }
+ ],
"source": [
"|Index|0|1|2|3|4|5|6|7|\n",
"|:-:|:-:|:-:|:-:|:-:|:-:|:-:|:-:|\n",
--
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