From 12f1e49583a2e650eb086399ca7fac19a9a2515d Mon Sep 17 00:00:00 2001
From: didihou <didi.hou@rwth-aachen.de>
Date: Thu, 14 Sep 2023 14:21:13 +0200
Subject: [PATCH] /
---
.../M2E_visualize_resting_state-checkpoint.py | 3 ++-
figures/MAM2EBRAINS/M2E_visualize_resting_state.py | 3 ++-
multi-area-model.ipynb | 11 ++++++-----
3 files changed, 10 insertions(+), 7 deletions(-)
diff --git a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_resting_state-checkpoint.py b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_resting_state-checkpoint.py
index 29761a6..c5d9f08 100644
--- a/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_resting_state-checkpoint.py
+++ b/figures/MAM2EBRAINS/.ipynb_checkpoints/M2E_visualize_resting_state-checkpoint.py
@@ -5,7 +5,8 @@ import os
import sys
sys.path.append('./figures/Schmidt2018_dyn')
-from helpers import original_data_path, population_labels
+# from helpers import original_data_path, population_labels
+from helpers import population_labels
from multiarea_model import MultiAreaModel
from plotcolors import myred, myblue
diff --git a/figures/MAM2EBRAINS/M2E_visualize_resting_state.py b/figures/MAM2EBRAINS/M2E_visualize_resting_state.py
index 29761a6..c5d9f08 100644
--- a/figures/MAM2EBRAINS/M2E_visualize_resting_state.py
+++ b/figures/MAM2EBRAINS/M2E_visualize_resting_state.py
@@ -5,7 +5,8 @@ import os
import sys
sys.path.append('./figures/Schmidt2018_dyn')
-from helpers import original_data_path, population_labels
+# from helpers import original_data_path, population_labels
+from helpers import population_labels
from multiarea_model import MultiAreaModel
from plotcolors import myred, myblue
diff --git a/multi-area-model.ipynb b/multi-area-model.ipynb
index 6d39e50..2445cfb 100644
--- a/multi-area-model.ipynb
+++ b/multi-area-model.ipynb
@@ -120,14 +120,15 @@
]
},
{
- "ename": "ModuleNotFoundError",
- "evalue": "No module named 'M2E_visualize_interareal_connectivity'",
+ "ename": "ImportError",
+ "evalue": "cannot import name 'original_data_path' from 'helpers' (/opt/app-root/src/MAM2EBRAINS/./figures/Schmidt2018/helpers.py)",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
- "\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)",
- "Cell \u001b[0;32mIn [2], line 12\u001b[0m\n\u001b[1;32m 10\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mmultiarea_model\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m MultiAreaModel\n\u001b[1;32m 11\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mmultiarea_model\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m Analysis\n\u001b[0;32m---> 12\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_interareal_connectivity\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m visualize_interareal_connectivity\n\u001b[1;32m 13\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_instantaneous_and_mean_firing_rates\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_instan_mean_firing_rate\n\u001b[1;32m 14\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n",
- "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'M2E_visualize_interareal_connectivity'"
+ "\u001b[0;31mImportError\u001b[0m Traceback (most recent call last)",
+ "Cell \u001b[0;32mIn [2], line 16\u001b[0m\n\u001b[1;32m 14\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_interareal_connectivity\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m visualize_interareal_connectivity\n\u001b[1;32m 15\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_instantaneous_and_mean_firing_rates\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_instan_mean_firing_rate\n\u001b[0;32m---> 16\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mM2E_visualize_resting_state\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m plot_resting_state\n\u001b[1;32m 17\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mconfig\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m base_path, data_path\n",
+ "File \u001b[0;32m~/MAM2EBRAINS/./figures/MAM2EBRAINS/M2E_visualize_resting_state.py:8\u001b[0m\n\u001b[1;32m 5\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01msys\u001b[39;00m\n\u001b[1;32m 6\u001b[0m sys\u001b[38;5;241m.\u001b[39mpath\u001b[38;5;241m.\u001b[39mappend(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m./figures/Schmidt2018_dyn\u001b[39m\u001b[38;5;124m'\u001b[39m)\n\u001b[0;32m----> 8\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mhelpers\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m original_data_path, population_labels\n\u001b[1;32m 9\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mmultiarea_model\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m MultiAreaModel\n\u001b[1;32m 10\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mplotcolors\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m myred, myblue\n",
+ "\u001b[0;31mImportError\u001b[0m: cannot import name 'original_data_path' from 'helpers' (/opt/app-root/src/MAM2EBRAINS/./figures/Schmidt2018/helpers.py)"
]
}
],
--
GitLab