From 10e5c3a7116233f88c2209970f93f26952647385 Mon Sep 17 00:00:00 2001 From: Johanna Senk <jhnnsnk@users.noreply.github.com> Date: Wed, 20 Jul 2022 18:45:37 +0200 Subject: [PATCH] Add documentation of EBRAINS workflow --- README.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/README.md b/README.md index 9c82bec..b8cb421 100644 --- a/README.md +++ b/README.md @@ -227,6 +227,17 @@ The SLN fit in `multiarea_model/data_multiarea/VisualCortex_Data.py` and `figure The calculation of BOLD signals from the simulated firing rates for Fig. 8 of [3] requires an installation of R and the R library `neuRosim` (<https://cran.r-project.org/web/packages/neuRosim/index.html>). +## Testing on EBRAINS + +The Jupyter Notebook `multi-area-model.ipynb` illustrates the simulation workflow with a down-scaled version of the multi-area model. This notebook can be explored and executed online in the Jupyter Lab provided by EBRAINS without the need to install any software yourself. + +1. Create a fork of this repository. Copy the address of your fork by clicking on `Code`, `HTTPS`, and then the copy icon. +2. Go to https://lab.de.ebrains.eu, log in, and select a computing center from the given list. +3. In the Jupyter Lab, click on the `Git Clone` icon and paste the address of your fork. +4. Enter the folder `multi-area-model` with the cloned repository and open the notebook `multi-area-model.ipynb`. Make sure that the kernel (top right) is set to `EBRAINS_experimental_release`. +5. Run the notebook! +6. You can also modify the code, do git commits, and push your changes to your own fork. + ## Contributors All authors of the publications [1-3] made contributions to the -- GitLab